Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563553
Identifier: 108563553
GI number: 108563553
Start: 1188900
End: 1190063
Strand: Reverse
Name: 108563553
Synonym: HPAG1_1128
Alternate gene names: NA
Gene position: 1190063-1188900 (Counterclockwise)
Preceding gene: 108563554
Following gene: 108563552
Centisome position: 74.55
GC content: 33.51
Gene sequence:
>1164_bases ATGCCTGTTATAAGAGTTTTAGTAATGCTTGCAACAATGATGATGAAATTAGTGAAAACGGCAAAAGAAAAGAAAGTTTT TAAGAATGTGGGAATATCTATAATGGGGATTGCTTTTTGGGAAGCGATAAAAGACTCGATAAAAAAACAAATTAAAAAAA GCGATTGGATATGTGGGAATGTTAAGACTGCGGATGATTATTTAAAAACGCATCCTAACTCATGGTTTAATTCAGCAATA GGTGTAGCAACGATAACAACCATGCTTATGAATGTGTGTTTTGCTGATGACCAATCCAAAAAAGAAGTGGCTGAAACTCA AAAGGAAGCTGAAAACGCTAGGGATAGAGCGAACAAGAGTGGGATAGAACTCGCTAATAGTCAAATAAAAGCAGAACAGG AACAACAAAAGACAAGCAATATAGAGACTAATAATCAAATAAAAGTAGAACAAGAACAACAAAAGACAGAACAAGAAAAA CAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAACAACAAAA GACAGAACAAGAAAAACAAAAGACAAACAATACGCAAAAAGATCTCATTAAAAAAGCAGAACAAAATTGCCAAGAAAATC ATAATCAATTTTTTATTAAAAAAGTAGGAATTAAGGGTGGTATTGCTATAGAAGTAGAAGCTGAATGCAAAACCCCTAAA CCTGCAAAAACCAATCAAACCCCTATCCAGCCAAAACATCTCCCAAACTCTAAACAACCCCGCTCTCAAAGAGGATCAAA AACGCAAGAGCTTATCGCTTATTTGCAAAAAGAGCTAGAATCTCTGCCCTATTCGCAAAAAGCTATCGCTAAACAAGTGG ATTTTTATAAACCAAGTTCTATCGCTTATTTAGAACTAGATCCTAGAGATTTTAATGTTACCGAAGAATGGCAAAACGAA AATCTAAAAATACGCTCTAAAGCTCAAGCTAAAATGCTTGAAATGAGGGATTTAAAACCAGACCTACAAGCCCACCTTCC AATCTCTCAAAGCCTTTTGTTCGTTCAAAAAATATTTGCTGATATTAATAAAGAAATAAAAATAGTTGCTAATACTGAAA AGAAAGCAGAAAAAGCGAGTTATGGTTATAGTAAAAGGATGTAG
Upstream 100 bases:
>100_bases ACAATTTTTCAAACCAATCGTTTAATAGCGATTAAATATGACTATATATACTACAATAATAAGATTTTGATGGGTAAGAT TGTTTTTTGAAAGGATTTAA
Downstream 100 bases:
>100_bases GCATAAGAAAATAAGAACACCATAAAATCGTTCTTATATTCTAGGAGACATCAATCAATTTCTTGCCGTAGAAAAATCGC TTATTAGCTTGCTCCCTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MPVIRVLVMLATMMMKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQIKKSDWICGNVKTADDYLKTHPNSWFNSAI GVATITTMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELANSQIKAEQEQQKTSNIETNNQIKVEQEQQKTEQEK QKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLIKKAEQNCQENHNQFFIKKVGIKGGIAIEVEAECKTPK PAKTNQTPIQPKHLPNSKQPRSQRGSKTQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFNVTEEWQNE NLKIRSKAQAKMLEMRDLKPDLQAHLPISQSLLFVQKIFADINKEIKIVANTEKKAEKASYGYSKRM
Sequences:
>Translated_387_residues MPVIRVLVMLATMMMKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQIKKSDWICGNVKTADDYLKTHPNSWFNSAI GVATITTMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELANSQIKAEQEQQKTSNIETNNQIKVEQEQQKTEQEK QKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLIKKAEQNCQENHNQFFIKKVGIKGGIAIEVEAECKTPK PAKTNQTPIQPKHLPNSKQPRSQRGSKTQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFNVTEEWQNE NLKIRSKAQAKMLEMRDLKPDLQAHLPISQSLLFVQKIFADINKEIKIVANTEKKAEKASYGYSKRM >Mature_386_residues PVIRVLVMLATMMMKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQIKKSDWICGNVKTADDYLKTHPNSWFNSAIG VATITTMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELANSQIKAEQEQQKTSNIETNNQIKVEQEQQKTEQEKQ KTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLIKKAEQNCQENHNQFFIKKVGIKGGIAIEVEAECKTPKP AKTNQTPIQPKHLPNSKQPRSQRGSKTQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFNVTEEWQNEN LKIRSKAQAKMLEMRDLKPDLQAHLPISQSLLFVQKIFADINKEIKIVANTEKKAEKASYGYSKRM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44393; Mature: 44262
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVIRVLVMLATMMMKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQIKKSDWICGN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC VKTADDYLKTHPNSWFNSAIGVATITTMLMNVCFADDQSKKEVAETQKEAENARDRANKS CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC GIELANSQIKAEQEQQKTSNIETNNQIKVEQEQQKTEQEKQKTEQEKQKTSNIETNNQIK HHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE VEQEQQKTEQEKQKTNNTQKDLIKKAEQNCQENHNQFFIKKVGIKGGIAIEVEAECKTPK ECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCC PAKTNQTPIQPKHLPNSKQPRSQRGSKTQELIAYLQKELESLPYSQKAIAKQVDFYKPSS CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC IAYLELDPRDFNVTEEWQNENLKIRSKAQAKMLEMRDLKPDLQAHLPISQSLLFVQKIFA EEEEEECCCCCCCCHHHCCCCCEEEHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHH DINKEIKIVANTEKKAEKASYGYSKRM HCCCCEEEEECCHHHHHHHHCCHHCCC >Mature Secondary Structure PVIRVLVMLATMMMKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQIKKSDWICGN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC VKTADDYLKTHPNSWFNSAIGVATITTMLMNVCFADDQSKKEVAETQKEAENARDRANKS CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC GIELANSQIKAEQEQQKTSNIETNNQIKVEQEQQKTEQEKQKTEQEKQKTSNIETNNQIK HHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE VEQEQQKTEQEKQKTNNTQKDLIKKAEQNCQENHNQFFIKKVGIKGGIAIEVEAECKTPK ECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCC PAKTNQTPIQPKHLPNSKQPRSQRGSKTQELIAYLQKELESLPYSQKAIAKQVDFYKPSS CCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC IAYLELDPRDFNVTEEWQNENLKIRSKAQAKMLEMRDLKPDLQAHLPISQSLLFVQKIFA EEEEEECCCCCCCCHHHCCCCCEEEHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHH DINKEIKIVANTEKKAEKASYGYSKRM HCCCCEEEEECCHHHHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA