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The map label for this gene is deoB [H]

Identifier: 108563543

GI number: 108563543

Start: 1177511

End: 1178752

Strand: Reverse

Name: deoB [H]

Synonym: HPAG1_1118

Alternate gene names: 108563543

Gene position: 1178752-1177511 (Counterclockwise)

Preceding gene: 108563544

Following gene: 108563542

Centisome position: 73.84

GC content: 39.05

Gene sequence:

>1242_bases
ATGCAAAAAAGAGTGGTAATCTTATTATTGGATTCTTTTGGTATAGGGGCTAGTGAAGACGCTAAAGATTTTGGCGATTT
GGGGGCGAATACTTTAGGCAATATCGCTAAGGCTTGTTTCAATAACCTAGCTGATTCTAACGATCGCAAGGGGGCTTTGA
AACTGCCTTATTTAGAGAGTTTGGGTTTAGGGTTGAGCGCTTTAAAAGCTACAAACGAATTGCCCTTAGGCTTTGAATCT
AAACCCAATTTAATAGGGGCTTACGCTTATGCCAAAGAACTTTCTAGCGCTAAGGATACGATTTCTGGGCATTGGGAGAT
GATGGGCGCGCCCGTTCTTTTTGAGTGGGGGTATTTTAAAGACAAAAACAATTCCTTCCCTAAAGAAATTTTAGATGAAA
TTATGCGTAAAACTAAGATTAAGGGCTATTTAGGGAATTGCCACGCATCAGGGACAGAAATCATTAAAGATTTAGGTGAA
AAGCATTTAGAAACTTTATACCCCATTTTTTACACTTCAGCGGATTCGGTGTTTCAAATCGCTGTGCATGAAGAAAAGTT
TGGGCTGGATAACTTATACGCTCTTTGTGAAGAAGCGTTTCAAATTCTAGAGCCTTTAAAGATCGCTAGAGTGATCGCAC
GCCCCTTTATTGGCGCCAATAGAGAGGATTTCAAACGCACCGCTAATCGCAAAGACTATGCGATAAAGCCCCATAAAAAA
TTGCTTTTTGAAACATTTATTGAAGAAAAGCAGGGCGAAGTCATTAGCATTGGAAAAATCGCTGATATTTACGCTCATGT
GGGGATCACTCAAAAATTTAAAGCCGGTAGTTTGATGGAGCTATGCGATGTTACTTTAGAGCAAATCAAAAACGCTAAAA
ACAACAGCTTGATTTTCACGAATTTTGTGCATTTTGATAGTGATTATGGGCATCGGCGCGATATTAGCGGGTATGCTAAC
GCTTTAGAGTATTTTGATGCGCGTTTAAAAGAGATTTTAGACAATTTAAAAGAAAACGATTTGCTCATTCTTTGTGCCGA
TCATGGGTGTGATCCTAGCTTTAAAGGTACCGATCACACACGAGAATACATTCCTGTTTTGTTCTATCACAAGGATTTAC
AACCAGCCTTTTTAGGCAAGAGCGAGTCGTTTGCGGATATTGGGCAAAGTATCGCTTATTTTTTAGGATTAAGCCCCTTA
GATTATGGCAAAAACTTATTAAACTTTAAAGGACAACCATGA

Upstream 100 bases:

>100_bases
TTGCTTTAAAAGCGGTGCTTGTGGGCACGCTTTCTAATTTCATGAGCGCGACTATCGCCGGGTTATTCATAGGGCTAAAC
GCTCATTAAAAGGACAAAAC

Downstream 100 bases:

>100_bases
CCCCTCACATTAACGCCAAAATCGGCGATTTTTATCCTCAATGCCTTTTATGCGGCGATCCCTTAAGGGTGAGCTACATT
GCGAAAAAATTCTTACAAGA

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRKGALKLPYLESLGLGLSALKATNELPLGFES
KPNLIGAYAYAKELSSAKDTISGHWEMMGAPVLFEWGYFKDKNNSFPKEILDEIMRKTKIKGYLGNCHASGTEIIKDLGE
KHLETLYPIFYTSADSVFQIAVHEEKFGLDNLYALCEEAFQILEPLKIARVIARPFIGANREDFKRTANRKDYAIKPHKK
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQIKNAKNNSLIFTNFVHFDSDYGHRRDISGYAN
ALEYFDARLKEILDNLKENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAFLGKSESFADIGQSIAYFLGLSPL
DYGKNLLNFKGQP

Sequences:

>Translated_413_residues
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRKGALKLPYLESLGLGLSALKATNELPLGFES
KPNLIGAYAYAKELSSAKDTISGHWEMMGAPVLFEWGYFKDKNNSFPKEILDEIMRKTKIKGYLGNCHASGTEIIKDLGE
KHLETLYPIFYTSADSVFQIAVHEEKFGLDNLYALCEEAFQILEPLKIARVIARPFIGANREDFKRTANRKDYAIKPHKK
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQIKNAKNNSLIFTNFVHFDSDYGHRRDISGYAN
ALEYFDARLKEILDNLKENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAFLGKSESFADIGQSIAYFLGLSPL
DYGKNLLNFKGQP
>Mature_413_residues
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRKGALKLPYLESLGLGLSALKATNELPLGFES
KPNLIGAYAYAKELSSAKDTISGHWEMMGAPVLFEWGYFKDKNNSFPKEILDEIMRKTKIKGYLGNCHASGTEIIKDLGE
KHLETLYPIFYTSADSVFQIAVHEEKFGLDNLYALCEEAFQILEPLKIARVIARPFIGANREDFKRTANRKDYAIKPHKK
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQIKNAKNNSLIFTNFVHFDSDYGHRRDISGYAN
ALEYFDARLKEILDNLKENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAFLGKSESFADIGQSIAYFLGLSPL
DYGKNLLNFKGQP

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=56.019656019656, Blast_Score=479, Evalue=1e-136,
Organism=Escherichia coli, GI1789781, Length=421, Percent_Identity=26.3657957244656, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 46256; Mature: 46256

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRKGALKLPYLES
CCCCEEEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHH
LGLGLSALKATNELPLGFESKPNLIGAYAYAKELSSAKDTISGHWEMMGAPVLFEWGYFK
HCCCHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCEE
DKNNSFPKEILDEIMRKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
AVHEEKFGLDNLYALCEEAFQILEPLKIARVIARPFIGANREDFKRTANRKDYAIKPHKK
EEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHH
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQIKNAKNNSLIFT
HHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
NFVHFDSDYGHRRDISGYANALEYFDARLKEILDNLKENDLLILCADHGCDPSFKGTDHT
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
REYIPVLFYHKDLQPAFLGKSESFADIGQSIAYFLGLSPLDYGKNLLNFKGQP
HHHCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHCCCCCC
>Mature Secondary Structure
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRKGALKLPYLES
CCCCEEEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHH
LGLGLSALKATNELPLGFESKPNLIGAYAYAKELSSAKDTISGHWEMMGAPVLFEWGYFK
HCCCHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCEE
DKNNSFPKEILDEIMRKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
AVHEEKFGLDNLYALCEEAFQILEPLKIARVIARPFIGANREDFKRTANRKDYAIKPHKK
EEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHH
LLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLEQIKNAKNNSLIFT
HHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
NFVHFDSDYGHRRDISGYANALEYFDARLKEILDNLKENDLLILCADHGCDPSFKGTDHT
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
REYIPVLFYHKDLQPAFLGKSESFADIGQSIAYFLGLSPLDYGKNLLNFKGQP
HHHCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA