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The map label for this gene is ybbF [C]

Identifier: 108563423

GI number: 108563423

Start: 1052902

End: 1053660

Strand: Direct

Name: ybbF [C]

Synonym: HPAG1_0998

Alternate gene names: 108563423

Gene position: 1052902-1053660 (Clockwise)

Preceding gene: 108563422

Following gene: 108563424

Centisome position: 65.96

GC content: 36.36

Gene sequence:

>759_bases
ATGCTAGAAACTTATGCGCTTAAAAATGGGGCTGTTTTTATCTCTGATGCGCATTTTTTGCCCAAAAACCCTCATTTAAT
CCATACGCTTCAAGAACTTTTAAGCGCCAAACCCCCACAAGTCTTTTTCATGGGCGATATTTTCCATGCGCTTGTGGGCT
ATTTACCCCTAGATAAAGAGCAGCAAAAAATCATTGATTTAATCCATGCGTTAAGCGAAATTTCACAAGTCTTTTATTTT
GAAGGCAACCATGATTTTTCCATGCGTTTTGTATTCAATTCCAAAGTGATGGTTTTTGAGCGCCAAAACCAACCCGCATT
ATTCCAATATGATAACAAACGCTTTTTACTAGCCCATGGGGATTTATTCACTACTAAAGCGTATGAATTTTACATCACGC
AGCTCACCTCCACTTGGGCTAGATTTTTTCTAACTTTTTTAAATTTATTAAGTTTTAAAACCTTATACCCTCTTTTTAAA
AAACTCATTTATCAAAAACCCGTCCGCCTTTGGGAATTAGAGCCAAAAGAATTGCAATCTTTTATTGAAAAGCGCCTAAA
AGCCTATCAAAACTATATTAAAGATCTTAACATTGGTAGCATTGACGGCATTATAGAGGGGCATTTTCATCTCAAAAGCG
GTGCAAAAATCCCCTTGAATGCGCCTATTTATTGCCCACTGCCTTCCTTTTATTACGAACAAAGCCTTTTTAAGGTATCA
TCAAGTATTTTAGAATCATCTCAAAATAAGGACGCCTAA

Upstream 100 bases:

>100_bases
GCGAGCGTTCTTTCAATGGGCATGAGTGATGACTTTGAATTAGCGATTGCTTGCGGGGCGAATCTTTTAAGGATTGGCTC
TTTTTTGTTCAAAGAGTGAG

Downstream 100 bases:

>100_bases
ATCATGGCAGAAAAAACAGCTAACGATTTAAAATTGAGCGAGATAGAACTCGTGGATTTTCGTATTTATGGCATGCAAGA
GGGCGTCCCTTATGAGGGGA

Product: hypothetical protein

Products: 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1; UMP [C]

Alternate protein names: UDP-2 3-Diacylglucosamine Hydrolase; Pyridine Nucleotide-Disulfide Oxidoreductase YkgC

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MLETYALKNGAVFISDAHFLPKNPHLIHTLQELLSAKPPQVFFMGDIFHALVGYLPLDKEQQKIIDLIHALSEISQVFYF
EGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHGDLFTTKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFK
KLIYQKPVRLWELEPKELQSFIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNAPIYCPLPSFYYEQSLFKVS
SSILESSQNKDA

Sequences:

>Translated_252_residues
MLETYALKNGAVFISDAHFLPKNPHLIHTLQELLSAKPPQVFFMGDIFHALVGYLPLDKEQQKIIDLIHALSEISQVFYF
EGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHGDLFTTKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFK
KLIYQKPVRLWELEPKELQSFIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNAPIYCPLPSFYYEQSLFKVS
SSILESSQNKDA
>Mature_252_residues
MLETYALKNGAVFISDAHFLPKNPHLIHTLQELLSAKPPQVFFMGDIFHALVGYLPLDKEQQKIIDLIHALSEISQVFYF
EGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHGDLFTTKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFK
KLIYQKPVRLWELEPKELQSFIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNAPIYCPLPSFYYEQSLFKVS
SSILESSQNKDA

Specific function: Lipid A biosynthesis [C]

COG id: COG2908

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29439; Mature: 29439

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETYALKNGAVFISDAHFLPKNPHLIHTLQELLSAKPPQVFFMGDIFHALVGYLPLDKE
CCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCHH
QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHG
HHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCEEEEEEECCCCCEEEECCCEEEEEEC
DLFTTKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHH
FIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNAPIYCPLPSFYYEQSLFKVS
HHHHHHHHHHHHHHHCCCCCCCCEEECEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHH
SSILESSQNKDA
HHHHHCCCCCCC
>Mature Secondary Structure
MLETYALKNGAVFISDAHFLPKNPHLIHTLQELLSAKPPQVFFMGDIFHALVGYLPLDKE
CCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCHH
QQKIIDLIHALSEISQVFYFEGNHDFSMRFVFNSKVMVFERQNQPALFQYDNKRFLLAHG
HHHHHHHHHHHHHHHHHEEEECCCCEEEEEEECCEEEEEEECCCCCEEEECCCEEEEEEC
DLFTTKAYEFYITQLTSTWARFFLTFLNLLSFKTLYPLFKKLIYQKPVRLWELEPKELQS
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHH
FIEKRLKAYQNYIKDLNIGSIDGIIEGHFHLKSGAKIPLNAPIYCPLPSFYYEQSLFKVS
HHHHHHHHHHHHHHHCCCCCCCCEEECEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHH
SSILESSQNKDA
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; UDP-2,3-bis(3-hydroxymyristoyl)glucosamine [C]

Specific reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1 + UMP [C]

General reaction: Lipid A biosynthesis [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA