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The map label for this gene is yggS [C]

Identifier: 108563422

GI number: 108563422

Start: 1052232

End: 1052900

Strand: Direct

Name: yggS [C]

Synonym: HPAG1_0997

Alternate gene names: 108563422

Gene position: 1052232-1052900 (Clockwise)

Preceding gene: 108563421

Following gene: 108563423

Centisome position: 65.91

GC content: 38.12

Gene sequence:

>669_bases
ATGTTAGATTACCGCCAAAAAATTGATACCCTCATCACCAAAATAGAAAAGGCTCGCACCGCCTATTCAAGGCACCATAT
TGTCAAAATCGTGGCTGTTTCAAAAAACGCTTCCCCAGAAGCTATCCAACATTACTACAACTGCTCTCAAAGGGCTTTTG
GAGAAAATAAAGTTCAAGATTTAAAAATTAAAATGCATTCTTTAGAGCATTTGCCCCTTGAATGGCACATGATAGGCTCT
TTACAAGAAAATAAAATCAATGCGCTTTTGAATTTAAAACCCGCCCTTTTGCATTCTTTAGACTCTTTAAAACTCGCCCT
AAAAATAGAAAAGCGTTGCGAAATGTTGGGCGTCAATTTAAACGCTCTTTTACAGGTTAATAGTGCGTATGAGGAAAGCA
AGAGCGGGGTAATGCCTGAAGAAACGCTAGAAATTTATTCTCAAATCAGTGAAACTTGCAAGCATCTCAAGCTTAAGGGA
CTTATGTGTATAGGCGCTCATGCTGATGATGAAAAGGAAATTGAAAAATCCTTTATCACCACCAAAAAACTTTTTGACCA
AATAAAGAATGCGAGCGTTCTTTCAATGGGCATGAGTGATGACTTTGAATTAGCGATTGCTTGCGGGGCGAATCTTTTAA
GGATTGGCTCTTTTTTGTTCAAAGAGTGA

Upstream 100 bases:

>100_bases
TTTTAAAAGATTTTGAAACTTTAAATCAAAAATTCCATCTCACGCATTCTTTCAGCACGCACAAAGAAGATCTATAAAGA
AGAAGCCATAAAGAAGGATT

Downstream 100 bases:

>100_bases
GATGCTAGAAACTTATGCGCTTAAAAATGGGGCTGTTTTTATCTCTGATGCGCATTTTTTGCCCAAAAACCCTCATTTAA
TCCATACGCTTCAAGAACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MLDYRQKIDTLITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGS
LQENKINALLNLKPALLHSLDSLKLALKIEKRCEMLGVNLNALLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKG
LMCIGAHADDEKEIEKSFITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE

Sequences:

>Translated_222_residues
MLDYRQKIDTLITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGS
LQENKINALLNLKPALLHSLDSLKLALKIEKRCEMLGVNLNALLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKG
LMCIGAHADDEKEIEKSFITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
>Mature_222_residues
MLDYRQKIDTLITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGS
LQENKINALLNLKPALLHSLDSLKLALKIEKRCEMLGVNLNALLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKG
LMCIGAHADDEKEIEKSFITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=214, Percent_Identity=36.4485981308411, Blast_Score=109, Evalue=1e-24,
Organism=Escherichia coli, GI1789321, Length=203, Percent_Identity=35.4679802955665, Blast_Score=107, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=36.4444444444444, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=207, Percent_Identity=36.7149758454106, Blast_Score=95, Evalue=1e-20,
Organism=Drosophila melanogaster, GI45550861, Length=209, Percent_Identity=35.8851674641148, Blast_Score=115, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25131; Mature: 25131

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDYRQKIDTLITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQD
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH
LKIKMHSLEHLPLEWHMIGSLQENKINALLNLKPALLHSLDSLKLALKIEKRCEMLGVNL
HHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
NALLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFIT
HHEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHH
TKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCC
>Mature Secondary Structure
MLDYRQKIDTLITKIEKARTAYSRHHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQD
CCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH
LKIKMHSLEHLPLEWHMIGSLQENKINALLNLKPALLHSLDSLKLALKIEKRCEMLGVNL
HHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
NALLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFIT
HHEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHH
TKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE
HHHHHHHHCCCEEEEECCCCCCEEEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]