Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is 108563340
Identifier: 108563340
GI number: 108563340
Start: 961409
End: 961894
Strand: Direct
Name: 108563340
Synonym: HPAG1_0915
Alternate gene names: NA
Gene position: 961409-961894 (Clockwise)
Preceding gene: 108563339
Following gene: 108563341
Centisome position: 60.22
GC content: 41.77
Gene sequence:
>486_bases ATGACCATCAAAGTTTTTTCGCCCAAATACCCCACTGAATTAGAAGAATTTTATGCCAAGCGTATCGCTGACAACCCTTT AGGGTTTATCCAACGCTTGGACCTTTTGCCCAGCATTAGCGAATTCGTTCAAAAATTGCGCGAGCATGGTGGGGAATTTT TTGGAATGAGGAAGGATAAAAAGCTCATTGGGATCTGCGGGCTTAATCGTATCAATAAGACAGAAGCAGAGCTGTGCAAA TTCCACATGGATAGTGCTTATCAATCCCAAGGGTTGGGTCAAAAACTCTATGAGAGCGTGGAACGATACGCTTTTATTGA AGGCTATACTAAAATCTCTCTGCATGTGAGCAAAAGCCAAATCAAGGCATGCAACCTCTATCAAAAGCTGGGTTTTATGC CAGTCAAAGAAGAAGATTGCGTGGTGGAGTTGGGCGAAGAGATTTTGATTTTTCCTACTCTTTTTATGGAAAAGACTCTG TCTTAA
Upstream 100 bases:
>100_bases AAAACCCTAGCCCCCCTAGCCATAGAGCATGGTTTCAGGCTGAGCGATAGGCTCCATATCCGCTTGTGGGATAATCAAAA AGGGTTTTAAAAAGTTAATC
Downstream 100 bases:
>100_bases TTAGTGCGTCAATTTGACACACGCCCAAGCGATAATTTTAACTATCAAACTTTCATTAACGCAGCCCAATTAATACTAAA TAATCTCCAAAACAAACGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MTIKVFSPKYPTELEEFYAKRIADNPLGFIQRLDLLPSISEFVQKLREHGGEFFGMRKDKKLIGICGLNRINKTEAELCK FHMDSAYQSQGLGQKLYESVERYAFIEGYTKISLHVSKSQIKACNLYQKLGFMPVKEEDCVVELGEEILIFPTLFMEKTL S
Sequences:
>Translated_161_residues MTIKVFSPKYPTELEEFYAKRIADNPLGFIQRLDLLPSISEFVQKLREHGGEFFGMRKDKKLIGICGLNRINKTEAELCK FHMDSAYQSQGLGQKLYESVERYAFIEGYTKISLHVSKSQIKACNLYQKLGFMPVKEEDCVVELGEEILIFPTLFMEKTL S >Mature_160_residues TIKVFSPKYPTELEEFYAKRIADNPLGFIQRLDLLPSISEFVQKLREHGGEFFGMRKDKKLIGICGLNRINKTEAELCKF HMDSAYQSQGLGQKLYESVERYAFIEGYTKISLHVSKSQIKACNLYQKLGFMPVKEEDCVVELGEEILIFPTLFMEKTLS
Specific function: Unknown
COG id: COG0454
COG function: function code KR; Histone acetyltransferase HPA2 and related acetyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18574; Mature: 18443
Theoretical pI: Translated: 7.38; Mature: 7.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKVFSPKYPTELEEFYAKRIADNPLGFIQRLDLLPSISEFVQKLREHGGEFFGMRKDK CEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEECCCCCC KLIGICGLNRINKTEAELCKFHMDSAYQSQGLGQKLYESVERYAFIEGYTKISLHVSKSQ CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEECHHH IKACNLYQKLGFMPVKEEDCVVELGEEILIFPTLFMEKTLS HHHHHHHHHHCCCCCCCCCHHHHCCCHHEEHHHHHHHHHCC >Mature Secondary Structure TIKVFSPKYPTELEEFYAKRIADNPLGFIQRLDLLPSISEFVQKLREHGGEFFGMRKDK EEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEECCCCCC KLIGICGLNRINKTEAELCKFHMDSAYQSQGLGQKLYESVERYAFIEGYTKISLHVSKSQ CEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEECHHH IKACNLYQKLGFMPVKEEDCVVELGEEILIFPTLFMEKTLS HHHHHHHHHHCCCCCCCCCHHHHCCCHHEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA