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The map label for this gene is 108562709

Identifier: 108562709

GI number: 108562709

Start: 287517

End: 288959

Strand: Direct

Name: 108562709

Synonym: HPAG1_0284

Alternate gene names: NA

Gene position: 287517-288959 (Clockwise)

Preceding gene: 108562707

Following gene: 108562710

Centisome position: 18.01

GC content: 37.56

Gene sequence:

>1443_bases
TTGGAATTGAAAAAAATCGCCCTTATTTTAGATGGCATTGTAGCAAAAAATTTTTTAGACTTGGTGCTAAGGCATTATTC
TAATCATAATTTTTATATAGTGGTCGTCAAAAATGAGAGCCTTATCCCTAAAAACTACCCGAGCACTTTCGCTTTTCATT
GTTTTGATGCGACTTCTAGTTTCAGGCTTTTGCAAGTGTTAAACGATGAGGTGAGCGATGCGTTTTTAATCCTACAAGAT
TTTAAAGAGCAACGCATCATTCATAAAATCATTCAAACCCATTTCAAACGCATGCGCGTGGTTTTGAGCGTGAAAAGAGA
TGGTGAAAAAACTTTAGAAAATGATGAAGAGAATAAAGATGAAAAGCTTATTTTGATTGATGAATTTGAAGTTTTAGCCA
ATAAATTCATTTCTCGTTTGCCTAATATCCCTAGCACCCCTAGAGAGTTTGGGTTAGGCAAAGGCGAGATCATGGAGATT
GATGTGCCTTTTGGGAGTATTTTTGCTTACAGACACATTGGCTCTATCAGGCAAAAAGAATACAGGATTGTAGGGCTTTA
TCGCAACGATGTTTTGTTGCTCGCTACTAAATCTTTAGTTATCCAGCCGCGAGACATTCTCTTAGTGGCGGGTAATCCTG
AAATTTTAAACGCGGTGTATCTTCAGGTCAAAAGCAATGTGGGGCAGTTCCCAGCCCCCTTTGGCAAGAGCATTTATTTA
TACATTGATATGCGTTTGCAGAGCAGAAAAGCGATGATGCGCGATGTGTATCAAGCCTTGTTTTTGCACAAACATTTAAA
GAGCTATAAGCTCTACATTCAGGTTTTACACCCCACTAGCCCTAAGTTTTATCATAAATTTTTATCGCTAGAAACCGAAA
GCATTGAAGTGAATTTTGATTTTTACGGGAAAAGTTTTATCCAAAAACTCCATGAAGACCACCAGAAAAAAATGGGCCTA
ATCGTGGTAGGCAGAGAGCTTTTTTTATCTAAAAAACACCGAAAGGCCTTGTATAAAACAGCCACCCCAGTTTATAAAAC
CAACACTTCTGGCTTGTTTAAAACCTCTCAAAGCGTGGTGGTTTTGAATGAAAGCTTGGATATTAATGAGGACATGTCTT
CAGTGATCTTTGATGTGTCTATGCAAATGGATTTGGGCTTGTTGCTCTATGATTTTGATCCTAACAGGCGCTATAAAAAC
GAGATTGTCAATCATTATGAAAATTTAGCCAACACGCTCAACCGCAAGATTGAGATTTTTCAAACCGATATTAGAAATCC
TATCATGTATCTCAATTCTTTAAGAAATCCCATTTTGCATTTCATGCCTTTTGAAGAGTGCATCACACACACGCGCTTTT
GGTGGTTTTTATCCACTAAAGTGGAAAAATTAGCGTTTTTAAACGATGATAACCCTCAAATTTTTATCCCTGTAGCGGAG
TGA

Upstream 100 bases:

>100_bases
AAAAGACCAGCTCGCGCGTTATCATCAACAGCTTGGAGTTGAAAATCCATCGTTTAAGCCTTAATCTTGGATATAATGGC
GTAATCATTTTTTAGGAAGT

Downstream 100 bases:

>100_bases
AAGAATGCAAGAAATTTTAATCCCTTTAAAAGAAAAAAGCTATAAAGTGTTTTTGGGGGAACTGCCCAAAATTGAATTGA
AACAAAAAGCGCTCATCATT

Product: hypothetical protein

Products: NA

Alternate protein names: TrkA-C; TrkA-C Domain-Containing Protein; TrkA Domain Protein; Trka-C Domain Protein; TrkA-C Domain Protein

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFRLLQVLNDEVSDAFLILQD
FKEQRIIHKIIQTHFKRMRVVLSVKRDGEKTLENDEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEI
DVPFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLATKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL
YIDMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGL
IVVGRELFLSKKHRKALYKTATPVYKTNTSGLFKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKN
EIVNHYENLANTLNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE

Sequences:

>Translated_480_residues
MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFRLLQVLNDEVSDAFLILQD
FKEQRIIHKIIQTHFKRMRVVLSVKRDGEKTLENDEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEI
DVPFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLATKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL
YIDMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGL
IVVGRELFLSKKHRKALYKTATPVYKTNTSGLFKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKN
EIVNHYENLANTLNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE
>Mature_480_residues
MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSSFRLLQVLNDEVSDAFLILQD
FKEQRIIHKIIQTHFKRMRVVLSVKRDGEKTLENDEENKDEKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEI
DVPFGSIFAYRHIGSIRQKEYRIVGLYRNDVLLLATKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL
YIDMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFDFYGKSFIQKLHEDHQKKMGL
IVVGRELFLSKKHRKALYKTATPVYKTNTSGLFKTSQSVVVLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKN
EIVNHYENLANTLNRKIEIFQTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE

Specific function: Unknown

COG id: COG3400

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56176; Mature: 56176

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCH
FRLLQVLNDEVSDAFLILQDFKEQRIIHKIIQTHFKRMRVVLSVKRDGEKTLENDEENKD
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHCCCCCCCC
EKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKE
CEEEEEEHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
YRIVGLYRNDVLLLATKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL
EEEEEEEECCEEEEEECCEEECCCEEEEECCCCHHHHHHHEEECCCCCCCCCCCCCEEEE
YIDMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFD
EEEEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCEEEEEEEEEE
FYGKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNTSGLFKTSQSVV
CCCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCCEECCCCCCEECCCEEE
VLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKNEIVNHYENLANTLNRKIEIF
EEECCCCCCCCHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEE
QTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE
HHHHCCHHHHHHHHCCHHHHCCCHHHHHHHHHEEEEEHHHHHHHEEECCCCCEEEEEECC
>Mature Secondary Structure
MELKKIALILDGIVAKNFLDLVLRHYSNHNFYIVVVKNESLIPKNYPSTFAFHCFDATSS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCH
FRLLQVLNDEVSDAFLILQDFKEQRIIHKIIQTHFKRMRVVLSVKRDGEKTLENDEENKD
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHCCCCCCCC
EKLILIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIDVPFGSIFAYRHIGSIRQKE
CEEEEEEHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
YRIVGLYRNDVLLLATKSLVIQPRDILLVAGNPEILNAVYLQVKSNVGQFPAPFGKSIYL
EEEEEEEECCEEEEEECCEEECCCEEEEECCCCHHHHHHHEEECCCCCCCCCCCCCEEEE
YIDMRLQSRKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLSLETESIEVNFD
EEEEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCEEEEEEEEEE
FYGKSFIQKLHEDHQKKMGLIVVGRELFLSKKHRKALYKTATPVYKTNTSGLFKTSQSVV
CCCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHCCCCCEECCCCCCEECCCEEE
VLNESLDINEDMSSVIFDVSMQMDLGLLLYDFDPNRRYKNEIVNHYENLANTLNRKIEIF
EEECCCCCCCCHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHEEEE
QTDIRNPIMYLNSLRNPILHFMPFEECITHTRFWWFLSTKVEKLAFLNDDNPQIFIPVAE
HHHHCCHHHHHHHHCCHHHHCCCHHHHHHHHHEEEEEHHHHHHHEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA