| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488252
Identifier: 103488252
GI number: 103488252
Start: 2931531
End: 2932316
Strand: Reverse
Name: 103488252
Synonym: Sala_2775
Alternate gene names: NA
Gene position: 2932316-2931531 (Counterclockwise)
Preceding gene: 103488254
Following gene: 103488250
Centisome position: 87.66
GC content: 65.39
Gene sequence:
>786_bases ATGAAACTGCACATTTCCGCTTCCCTAAAGTACCGCCTGCCCGAACCTGCCCATCTGATGCTTCAGATCGAAGCCGCGGA CGGTGGGGGCCAGAGGGTGATCGACGCCGCGCTGGACCTGGGCGAGCCGGCGCAGATGGCGCGGGTTCGAGACGCCGATA GCGTTTGCACGCCGCTCTGGCTGCATGCCGAGGGTGCGCTCGATGTCGCCTATCACGCGATCGTCGCCGTCGAGCGCGGC GACGCCGACCTTGCTGCACTCGCGCCGGTGCCGCTGCACCGTCTTCCTGCGGACGCGATCCTTTATCTCAACGAATCGCG CTATTGCCCGTCGAACAAGTTTCACGCCTTCGTCGATCGCCGCTTTGGCGAACTCGATGGCGGCGCGAAAATCCAGCGGA TGCGCGACTGGATCGAAAGTCGTTTCACCTATGTCACGGGGGCCAGCGACGCCGAGACGGGGGCGCTCGACAGCTTTGTC GAACGCCGCGGCGTCTGCCGCGACTATGCCCATGTGATGATCGCGCTCGCCCGCGCGGCGCATGTCCCCGCGCGCATGGC GAGCGTCTATGCGCTCGGCGTCCGCCCGCAGGATTTCCACGCGGTTGCCGAAGTCTATCTGGACGGCGACTGGCATATGG TCGATGCGACGGGCATGACGCGGCCATCCGAATGCGCGCGCATCTGCGTCGGCCGCGACGCCGCCGACATCGCCTTCCTG ACCGCCTATCGCGCGATCGATTTTGTCAACCAGTCCGTGCAGGTCGAGCGCATCGAGGAGACATAG
Upstream 100 bases:
>100_bases TGGTGCGCGTAGCCGTCACTTGTGCTTTATCCTGGAGCGGCGCACGCCGCTTCTAGCTGCCATTAGCGCGACCGATCCCT GCCTCATGCGTTGTCGATAG
Downstream 100 bases:
>100_bases CCGCATGGCGACATCGCCCGGTCAGTCACGACGCGAAAAACTTGGAGCGGGTGAAGGGAATCGAACCCTCGTCGTAAGCT TGGGAAGCTTCTGCTCTACC
Product: transglutaminase-like protein
Products: NA
Alternate protein names: Transglutaminase Domain Protein; Transglutaminase-Like; Transglutaminase Family Protein; Transglutaminase-Like Protein; Transglutaminase-Like Superfamily Protein; Transglutaminase-Like Domain-Containing Protein; Cysteine Protease Transglutaminase-Like Protein; Transglutaminase-Like S Cysteine Proteases; Transglutaminase; Protease Transglutaminase-Like; Cysteine Protease; Transglutaminase/Protease-Like Protein; Transglutaminase/Protease; Transglutaminase-Like S Cysteine Protease; Transglutaminase-Like Cysteine Protease; Cystein Protease
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLWLHAEGALDVAYHAIVAVERG DADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDRRFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFV ERRGVCRDYAHVMIALARAAHVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL TAYRAIDFVNQSVQVERIEET
Sequences:
>Translated_261_residues MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLWLHAEGALDVAYHAIVAVERG DADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDRRFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFV ERRGVCRDYAHVMIALARAAHVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL TAYRAIDFVNQSVQVERIEET >Mature_261_residues MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLWLHAEGALDVAYHAIVAVERG DADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDRRFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFV ERRGVCRDYAHVMIALARAAHVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL TAYRAIDFVNQSVQVERIEET
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28734; Mature: 28734
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLW CEEEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCEEE LHAEGALDVAYHAIVAVERGDADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDR EECCCCHHHEEEEEEEEECCCCCEEEECCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHH RFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFVERRGVCRDYAHVMIALARAA HHCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH HVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL CCHHHHHHEEEECCCCCHHHHEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHH TAYRAIDFVNQSVQVERIEET HHHHHHHHHCCCEEEEEECCC >Mature Secondary Structure MKLHISASLKYRLPEPAHLMLQIEAADGGGQRVIDAALDLGEPAQMARVRDADSVCTPLW CEEEEEEEEEECCCCCCEEEEEEEECCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCEEE LHAEGALDVAYHAIVAVERGDADLAALAPVPLHRLPADAILYLNESRYCPSNKFHAFVDR EECCCCHHHEEEEEEEEECCCCCEEEECCCCHHHCCCCEEEEEECCCCCCCCCHHHHHHH RFGELDGGAKIQRMRDWIESRFTYVTGASDAETGALDSFVERRGVCRDYAHVMIALARAA HHCCCCCCHHHHHHHHHHHHCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH HVPARMASVYALGVRPQDFHAVAEVYLDGDWHMVDATGMTRPSECARICVGRDAADIAFL CCHHHHHHEEEECCCCCHHHHEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHH TAYRAIDFVNQSVQVERIEET HHHHHHHHHCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA