| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is yesM [H]
Identifier: 103488151
GI number: 103488151
Start: 2820151
End: 2821275
Strand: Reverse
Name: yesM [H]
Synonym: Sala_2674
Alternate gene names: 103488151
Gene position: 2821275-2820151 (Counterclockwise)
Preceding gene: 103488152
Following gene: 103488150
Centisome position: 84.34
GC content: 63.11
Gene sequence:
>1125_bases ATGCCATTGTTCCGACTGACCTCGCCCGGTCCCTTTTTCGACAACAAGGTTCGCGCCTTCTGGAACCTCCAGATCCTCGG CTGGGCGGCGTGGCTCGGGTTGCGCGGCGTGTCAGGGCTCGCCAACGGACAGGCGTTCACCTTCCTCATCCCGCAGGTGA TTTCGGCGATCACGGGCTTTTCGCTGACGCTGATCCTGTCGGTCTGTTACCGCGCGCTCATCAATCGTCGGCCGCTGCTG ATGTGGGGGGTCAGCTTTGGCCTCGCCGGCCTCGCGACCGCGCTGTGGGCGTTCATCGACGCCTGGGTCGCGCAGATCCA GAACCCGGCGAGTGAAGCCGGATTTACGAGCCTTTTGCTCGGCGCGGTCTATATCGACGCGACCTCGCTCGCGGCCTGGT CGGCGCTCTATTTCGCGATCAACTATTTCCTCCAGCTCGAGGAACAGAATGACCGCGTGCTGCGGCTCGAGGCGCAGGCG GCGTCGGCGCAGCTCGCGATGCTGCGCTACCAGCTCAACCCGCATTTCCTGTTCAACACGCTGAACAGCATTTCGACGCT CGTGCTCCTGAAACAGGCGGAGCCCGCGAATGCAATGTTGTCGCGCCTGTCGGCCTTCCTTCGCTACACGCTTGCCAACG AGCCGACCGCACAGGTGACGCTGGCGCAGGAGATCGAGACGCTGAAGCTTTATCTCGATATCGAAAAAATGCGCTTCGAG GACCGGCTGCGGCCGCATTTTGCGATCGACCCCGCGGTCGCGCGCGCGCGCCTGCCTTCGCTGCTGCTTCAGCCGCTCAT CGAAAATGCGATCAAATATGCGGTGACGCCGCAGGAGGATGGCGCCGACATCACCATTTCCGCACAGCTGGCCGGTCAAA ATGTCCGGATCACCGTGTCCGACACCGGCGCGGGATTGTCAGGTGACCGCACCGACCCCACCACGGGCGTTGCAACGGAA TCGACCGGCGTGGGTTTAGCCAATATCCGGGACCGCCTGGCGCAGGCTTTTGGCGACCAGCACCGGTTCGACGCCCAGGC GGGCGCTGAGGGCGGCTTCACGGTGGTGATCGAGTTTCCGTTCCAGCCCGATGGGCAAGCAAGAATTGGAACCGAAGACA CATGA
Upstream 100 bases:
>100_bases CGCGCCGACGGGCCGGCGCCGGTCGCGGCCGGATGACCCACGGCAGCGCCGCCCGCCTTGCCGCGCGCGGTCGTTGACCC ACGCTCTCGCCCGCACTTCC
Downstream 100 bases:
>100_bases CGATCAGAACCATTCTGGTGGATGACGAAAAACTGGCGACCCAGGGCCTGCAACTGCGGCTTGAGGCGCACCCGGATGTC GAGGTGGTCGACACCGCCCA
Product: signal transduction histidine kinase, LytS
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MPLFRLTSPGPFFDNKVRAFWNLQILGWAAWLGLRGVSGLANGQAFTFLIPQVISAITGFSLTLILSVCYRALINRRPLL MWGVSFGLAGLATALWAFIDAWVAQIQNPASEAGFTSLLLGAVYIDATSLAAWSALYFAINYFLQLEEQNDRVLRLEAQA ASAQLAMLRYQLNPHFLFNTLNSISTLVLLKQAEPANAMLSRLSAFLRYTLANEPTAQVTLAQEIETLKLYLDIEKMRFE DRLRPHFAIDPAVARARLPSLLLQPLIENAIKYAVTPQEDGADITISAQLAGQNVRITVSDTGAGLSGDRTDPTTGVATE STGVGLANIRDRLAQAFGDQHRFDAQAGAEGGFTVVIEFPFQPDGQARIGTEDT
Sequences:
>Translated_374_residues MPLFRLTSPGPFFDNKVRAFWNLQILGWAAWLGLRGVSGLANGQAFTFLIPQVISAITGFSLTLILSVCYRALINRRPLL MWGVSFGLAGLATALWAFIDAWVAQIQNPASEAGFTSLLLGAVYIDATSLAAWSALYFAINYFLQLEEQNDRVLRLEAQA ASAQLAMLRYQLNPHFLFNTLNSISTLVLLKQAEPANAMLSRLSAFLRYTLANEPTAQVTLAQEIETLKLYLDIEKMRFE DRLRPHFAIDPAVARARLPSLLLQPLIENAIKYAVTPQEDGADITISAQLAGQNVRITVSDTGAGLSGDRTDPTTGVATE STGVGLANIRDRLAQAFGDQHRFDAQAGAEGGFTVVIEFPFQPDGQARIGTEDT >Mature_373_residues PLFRLTSPGPFFDNKVRAFWNLQILGWAAWLGLRGVSGLANGQAFTFLIPQVISAITGFSLTLILSVCYRALINRRPLLM WGVSFGLAGLATALWAFIDAWVAQIQNPASEAGFTSLLLGAVYIDATSLAAWSALYFAINYFLQLEEQNDRVLRLEAQAA SAQLAMLRYQLNPHFLFNTLNSISTLVLLKQAEPANAMLSRLSAFLRYTLANEPTAQVTLAQEIETLKLYLDIEKMRFED RLRPHFAIDPAVARARLPSLLLQPLIENAIKYAVTPQEDGADITISAQLAGQNVRITVSDTGAGLSGDRTDPTTGVATES TGVGLANIRDRLAQAFGDQHRFDAQAGAEGGFTVVIEFPFQPDGQARIGTEDT
Specific function: Member of the two-component regulatory system yesM/yesN. Probably activates yesN by phosphorylation [H]
COG id: COG2972
COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788723, Length=249, Percent_Identity=30.5220883534137, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1788446, Length=215, Percent_Identity=35.8139534883721, Blast_Score=120, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR010559 - InterPro: IPR005467 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF06580 His_kinase [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 40852; Mature: 40721
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLFRLTSPGPFFDNKVRAFWNLQILGWAAWLGLRGVSGLANGQAFTFLIPQVISAITGF CCCEECCCCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCH SLTLILSVCYRALINRRPLLMWGVSFGLAGLATALWAFIDAWVAQIQNPASEAGFTSLLL HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GAVYIDATSLAAWSALYFAINYFLQLEEQNDRVLRLEAQAASAQLAMLRYQLNPHFLFNT HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHH LNSISTLVLLKQAEPANAMLSRLSAFLRYTLANEPTAQVTLAQEIETLKLYLDIEKMRFE HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHEEEHEEEEHHHHHHH DRLRPHFAIDPAVARARLPSLLLQPLIENAIKYAVTPQEDGADITISAQLAGQNVRITVS HHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCEEEEEEE DTGAGLSGDRTDPTTGVATESTGVGLANIRDRLAQAFGDQHRFDAQAGAEGGFTVVIEFP CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC FQPDGQARIGTEDT CCCCCCCCCCCCCC >Mature Secondary Structure PLFRLTSPGPFFDNKVRAFWNLQILGWAAWLGLRGVSGLANGQAFTFLIPQVISAITGF CCEECCCCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCH SLTLILSVCYRALINRRPLLMWGVSFGLAGLATALWAFIDAWVAQIQNPASEAGFTSLLL HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GAVYIDATSLAAWSALYFAINYFLQLEEQNDRVLRLEAQAASAQLAMLRYQLNPHFLFNT HHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEECHHHHHHHHHHHHCCCCHHHHHH LNSISTLVLLKQAEPANAMLSRLSAFLRYTLANEPTAQVTLAQEIETLKLYLDIEKMRFE HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHEEEHEEEEHHHHHHH DRLRPHFAIDPAVARARLPSLLLQPLIENAIKYAVTPQEDGADITISAQLAGQNVRITVS HHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCEEEEEEE DTGAGLSGDRTDPTTGVATESTGVGLANIRDRLAQAFGDQHRFDAQAGAEGGFTVVIEFP CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC FQPDGQARIGTEDT CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]