| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488134
Identifier: 103488134
GI number: 103488134
Start: 2803724
End: 2804191
Strand: Reverse
Name: 103488134
Synonym: Sala_2657
Alternate gene names: NA
Gene position: 2804191-2803724 (Counterclockwise)
Preceding gene: 103488135
Following gene: 103488133
Centisome position: 83.83
GC content: 61.75
Gene sequence:
>468_bases ATGACGGACGCAACCCAGCCCGCCCTCGACATGGCGGCAATCATGCAACGTTTCTCGCAGTGGGAAGCCGACGCCGCAAA GCTCGTTCCCGAAAACAAGGCACGGCTGTTCGCCCGCCTCGCTTCGGCGGGCATCACGCTCGTAACCGTCACCTTCGACG GCTATGGCGATAGTGGCCAGATCGAGGATGTCGCCGCCTTCATCGGCGATCAGCCGGCCGAATTGTCCGGCGGTGCCGTT GAAGTGAGGATGCTGGACTACGGCGCCGGCCAGCCAGTCGCCAATTACCTGTCGGCAAGCGAGGCGATCGAGAACCTCGC CTATGACCTGCTGCGCCAGACGCATTGCGGATGGGAGAATAATGATGGCGCCTATGGCGAGTTCACCTTCGACGTGACCG CCGGGACGATCACGCTCGACTATAATGAGCGGTTCACCTCGTCCGAAAACCACGCGCACGAATGGTGA
Upstream 100 bases:
>100_bases TGGCCTTCGGGAATGACCCGGCGGCGCCATTCACCCTGTTTTCGTCAATCCCCAAAAGCCCGACCTCCGCGTCGGGCTTT TGCCTTTCAGGAGATCCGCA
Downstream 100 bases:
>100_bases GGAGGCGATGATGGGACATTGCTATCACCATGCGCTTTCCTCGGTCCGCAAATGGGGCGGCGAGCCGGAAGACTATCTGC CGCTCCACCAGTGGTTCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MTDATQPALDMAAIMQRFSQWEADAAKLVPENKARLFARLASAGITLVTVTFDGYGDSGQIEDVAAFIGDQPAELSGGAV EVRMLDYGAGQPVANYLSASEAIENLAYDLLRQTHCGWENNDGAYGEFTFDVTAGTITLDYNERFTSSENHAHEW
Sequences:
>Translated_155_residues MTDATQPALDMAAIMQRFSQWEADAAKLVPENKARLFARLASAGITLVTVTFDGYGDSGQIEDVAAFIGDQPAELSGGAV EVRMLDYGAGQPVANYLSASEAIENLAYDLLRQTHCGWENNDGAYGEFTFDVTAGTITLDYNERFTSSENHAHEW >Mature_154_residues TDATQPALDMAAIMQRFSQWEADAAKLVPENKARLFARLASAGITLVTVTFDGYGDSGQIEDVAAFIGDQPAELSGGAVE VRMLDYGAGQPVANYLSASEAIENLAYDLLRQTHCGWENNDGAYGEFTFDVTAGTITLDYNERFTSSENHAHEW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16849; Mature: 16717
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDATQPALDMAAIMQRFSQWEADAAKLVPENKARLFARLASAGITLVTVTFDGYGDSGQ CCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCC IEDVAAFIGDQPAELSGGAVEVRMLDYGAGQPVANYLSASEAIENLAYDLLRQTHCGWEN HHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NDGAYGEFTFDVTAGTITLDYNERFTSSENHAHEW CCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure TDATQPALDMAAIMQRFSQWEADAAKLVPENKARLFARLASAGITLVTVTFDGYGDSGQ CCCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCC IEDVAAFIGDQPAELSGGAVEVRMLDYGAGQPVANYLSASEAIENLAYDLLRQTHCGWEN HHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC NDGAYGEFTFDVTAGTITLDYNERFTSSENHAHEW CCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA