| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488115
Identifier: 103488115
GI number: 103488115
Start: 2777719
End: 2778432
Strand: Reverse
Name: 103488115
Synonym: Sala_2638
Alternate gene names: NA
Gene position: 2778432-2777719 (Counterclockwise)
Preceding gene: 103488116
Following gene: 103488114
Centisome position: 83.06
GC content: 61.2
Gene sequence:
>714_bases ATGCTGCTTGACCGCGCCGCCACGCTCGCAACGAAGATCAACACCTACCAGAAGCTCAAGAATAGCGCCGCCGAAGCCGA ACAGTTCGGTACACGCGCGAAGCAGTTCGAGACCGCTTCGCTGCTCATGGCGAGGCTTCGCGAGACGCTGACCGCCCTTG CGGAAGCCGGTGTTCAGGTCGATTTTCAGCCAAGCGACGGTCTCGGCTATGCCAACAAGGCGCGCACGTTGCGCGAAGCG ATCAGGGAGGATCCAGCAAAGGTCAACGACCCACCGTTCGACATCAAGCACGCCTTTATTGACCGCCTCAACAGTATCGC CAGCGCGGGGCAAAAGGCGGCGAGTGCTGCATGGAAAACCTATGTCGATAAACGCGCCGCCTTTGGCGCTGAGGACGTCT TGAGTGCGCTGGGCCAGGTGCCGCAATTTCGGGTGAGCGTCGCCAAGATACGGCAGATCCGAAGCGAGGTAGCGACCTTT GGTGCCAGCCTGCCTGCGGACCCCAAGGCGGCAATCGCCAGTCTCGACACGCTCGTCAGCCAGCACGAGGCGGCATGGAA CACCCTTGCGGCGTCCGATATCCCATCAAGCGTCGTCGCCTTCATTCGGGCCGCAGCCAATAGCGAGGCCCTTTTAAGCG CTTATACGTCCGAAGTGCAGACGTGGCTGGAAAGCCGCAACTTGCTCGGCGCATTCCGCATCGAGCTGAGGTAG
Upstream 100 bases:
>100_bases CACGGCGCAGTGGCGGCCAGTCTCGATCTGATCGATACAACGCTTACCGCGATCGAAGCCGATTTGATCGCGATGGCGAC GATTGACGGGGAGCAAGCCG
Downstream 100 bases:
>100_bases GCACGATCATGCCCGTGTCTAACCATGCCCTCGCGGTGCTCGACCGCATCGAAGCCATTGAGATGCGCTCCCTCGAATGG GGGTTCACCGATGGCGCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MLLDRAATLATKINTYQKLKNSAAEAEQFGTRAKQFETASLLMARLRETLTALAEAGVQVDFQPSDGLGYANKARTLREA IREDPAKVNDPPFDIKHAFIDRLNSIASAGQKAASAAWKTYVDKRAAFGAEDVLSALGQVPQFRVSVAKIRQIRSEVATF GASLPADPKAAIASLDTLVSQHEAAWNTLAASDIPSSVVAFIRAAANSEALLSAYTSEVQTWLESRNLLGAFRIELR
Sequences:
>Translated_237_residues MLLDRAATLATKINTYQKLKNSAAEAEQFGTRAKQFETASLLMARLRETLTALAEAGVQVDFQPSDGLGYANKARTLREA IREDPAKVNDPPFDIKHAFIDRLNSIASAGQKAASAAWKTYVDKRAAFGAEDVLSALGQVPQFRVSVAKIRQIRSEVATF GASLPADPKAAIASLDTLVSQHEAAWNTLAASDIPSSVVAFIRAAANSEALLSAYTSEVQTWLESRNLLGAFRIELR >Mature_237_residues MLLDRAATLATKINTYQKLKNSAAEAEQFGTRAKQFETASLLMARLRETLTALAEAGVQVDFQPSDGLGYANKARTLREA IREDPAKVNDPPFDIKHAFIDRLNSIASAGQKAASAAWKTYVDKRAAFGAEDVLSALGQVPQFRVSVAKIRQIRSEVATF GASLPADPKAAIASLDTLVSQHEAAWNTLAASDIPSSVVAFIRAAANSEALLSAYTSEVQTWLESRNLLGAFRIELR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25594; Mature: 25594
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLDRAATLATKINTYQKLKNSAAEAEQFGTRAKQFETASLLMARLRETLTALAEAGVQV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE DFQPSDGLGYANKARTLREAIREDPAKVNDPPFDIKHAFIDRLNSIASAGQKAASAAWKT EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVDKRAAFGAEDVLSALGQVPQFRVSVAKIRQIRSEVATFGASLPADPKAAIASLDTLVS HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH QHEAAWNTLAASDIPSSVVAFIRAAANSEALLSAYTSEVQTWLESRNLLGAFRIELR HHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHEEECC >Mature Secondary Structure MLLDRAATLATKINTYQKLKNSAAEAEQFGTRAKQFETASLLMARLRETLTALAEAGVQV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE DFQPSDGLGYANKARTLREAIREDPAKVNDPPFDIKHAFIDRLNSIASAGQKAASAAWKT EECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH YVDKRAAFGAEDVLSALGQVPQFRVSVAKIRQIRSEVATFGASLPADPKAAIASLDTLVS HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH QHEAAWNTLAASDIPSSVVAFIRAAANSEALLSAYTSEVQTWLESRNLLGAFRIELR HHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA