| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103488101
Identifier: 103488101
GI number: 103488101
Start: 2764095
End: 2764613
Strand: Reverse
Name: 103488101
Synonym: Sala_2623
Alternate gene names: NA
Gene position: 2764613-2764095 (Counterclockwise)
Preceding gene: 103488102
Following gene: 103488100
Centisome position: 82.64
GC content: 64.74
Gene sequence:
>519_bases ATGACCCACCAGCCTGCCTGTGGGCGCGTCCGCTCGCGTGCTGCAGACCCGCTGCGCAAGGACTGCACCGAGATCGAACT GATCTGGATCGAGAAGCGGATCGAGCACTGGATTCGTTTCGGCCGGATCGCGTCGGAGCGCATCGTCAGCCGCAAGACAC GCATCGTGGCCTTCCGGCCCGATGCCGTCGTCGCGTTCGTGCGCTGGTCGGCCAACGACTTCGGTACTGTCCATTCGCGC ATCGACATCCTGCGCGCGGTTCGTCCGGGCGAGGCCTATACGACCGCACCCTTCGTGCGGCCGGGCGGTGAGTTGCTGCT CTCGATCCAAGGCTGGCCGAAGGTCCGCAAGGTGCTCGAGATCATTGACAGGATCGAGGCCGAAGACCTCGATCCTTGCG ACATCGCGCCCGAGCATTGGCGGCATGTCCATAACCGGCTGAGCGCAGGCGAACCTGCACGCGTCTATACGGCGGAGCGC CATCAGGCATGGCTCAAGCGCAAGGCGCTGGGTCAATGA
Upstream 100 bases:
>100_bases CTGCGGATTTCGCGCCGCGCGCGCCGACGCCCGCATTGCTGCCACGCTGCCGCTCGGCGGCGGGCGGGCTGCTCTTCATT TCCATTACCGGAGAAGCCTC
Downstream 100 bases:
>100_bases GCCGCCGTCCGCTCTCCCGCTTCGTGCCGCACATCGCCGGCGCCGTAATTGGTTTCACGCTGGTCGCGGCAGTTCTGCCG CTGCCCAAGCTGTTGCTCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MTHQPACGRVRSRAADPLRKDCTEIELIWIEKRIEHWIRFGRIASERIVSRKTRIVAFRPDAVVAFVRWSANDFGTVHSR IDILRAVRPGEAYTTAPFVRPGGELLLSIQGWPKVRKVLEIIDRIEAEDLDPCDIAPEHWRHVHNRLSAGEPARVYTAER HQAWLKRKALGQ
Sequences:
>Translated_172_residues MTHQPACGRVRSRAADPLRKDCTEIELIWIEKRIEHWIRFGRIASERIVSRKTRIVAFRPDAVVAFVRWSANDFGTVHSR IDILRAVRPGEAYTTAPFVRPGGELLLSIQGWPKVRKVLEIIDRIEAEDLDPCDIAPEHWRHVHNRLSAGEPARVYTAER HQAWLKRKALGQ >Mature_171_residues THQPACGRVRSRAADPLRKDCTEIELIWIEKRIEHWIRFGRIASERIVSRKTRIVAFRPDAVVAFVRWSANDFGTVHSRI DILRAVRPGEAYTTAPFVRPGGELLLSIQGWPKVRKVLEIIDRIEAEDLDPCDIAPEHWRHVHNRLSAGEPARVYTAERH QAWLKRKALGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19855; Mature: 19724
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHQPACGRVRSRAADPLRKDCTEIELIWIEKRIEHWIRFGRIASERIVSRKTRIVAFRP CCCCCCHHHHHHHCCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC DAVVAFVRWSANDFGTVHSRIDILRAVRPGEAYTTAPFVRPGGELLLSIQGWPKVRKVLE CEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH IIDRIEAEDLDPCDIAPEHWRHVHNRLSAGEPARVYTAERHQAWLKRKALGQ HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCC >Mature Secondary Structure THQPACGRVRSRAADPLRKDCTEIELIWIEKRIEHWIRFGRIASERIVSRKTRIVAFRP CCCCCHHHHHHHCCCHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC DAVVAFVRWSANDFGTVHSRIDILRAVRPGEAYTTAPFVRPGGELLLSIQGWPKVRKVLE CEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH IIDRIEAEDLDPCDIAPEHWRHVHNRLSAGEPARVYTAERHQAWLKRKALGQ HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA