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The map label for this gene is trbB [H]

Identifier: 103488092

GI number: 103488092

Start: 2755360

End: 2756343

Strand: Reverse

Name: trbB [H]

Synonym: Sala_2614

Alternate gene names: 103488092

Gene position: 2756343-2755360 (Counterclockwise)

Preceding gene: 103488093

Following gene: 103488091

Centisome position: 82.4

GC content: 67.78

Gene sequence:

>984_bases
ATGGCATCGAGCTGGACCGATACAGAAGCGAGATCGCGTGGCGCGCGGATGCTGCGCACCGCGATTGGCCCGATGGTCGG
ACACTGGCTGACCGATCCCCTGGTCGTCGAGGTCATGCTCAACCCGGACGGCTGCCTGTGGGTGGACCGGCTGGGCACCG
GCCTTGCCGATACCGGAAGGCGATTGGCCCCTGCCGACGCGGAACGGATCATCCGTCTGGTCGCGCATCATGTCGGCGTC
GAGGTCCATGCCCGCAATCCCCGCGTCTCGGCCGAACTGCCGGAAACAGGGGAACGGTTCGAAGGGCTGCTGCCGCCCGT
CGTGACCGCGCCGGCCTTTGCCATCCGCAAGCCTGCCGTCGCGGTGTACACGCTGGCGGACTATGTGGCGGCGGGCATCA
TGTCCCAGCCCCAGGCCGACGCAATGCGCGCTGGCGTTATGGAGCGGCTCAACATCCTCGTTGCCGGTGGAACCGGCACG
GGCAAGACGACGCTCACCAACGCGCTTCTGGCCGAAGTGGCCCAGACGGGCGATCGCGTGGTGCTGATCGAGGATACGCG
CGAGCTGCAATGCGCAGCGCCCAATCTCGTCGCCATGCGGACGAAGGACGGCGTCGCGTCGCTCTCCGATCTCGTTCGCT
CCTCGCTGCGCCTGCGCCCCGATCGCATCCCCATCGGCGAGGTCCGTGGGGCCGAGGCGCTCGATCTGCTCAAAGCCTGG
GGCACCGGTCATCCCGGCGGCATTGGCACCATCCATGCCGGTAGCGCATTGGGTGCGCTGCGCCGAATGGAGCAGCTCAT
CCAGGAAGCGGTGGTGACCGTGCCGCGCGCGCTTATCGCCGAGACCATCAACCTCGTCGCAGTGCTGGTCCGTGACGGCC
ACGGCCGCCGCCTCGCCGAACTGGCCCGCGTCGAAGGGCTCGGCGCCGATGGCGACTACCGGCTCATCCTTCTCCCATCC
GAACAAGCAGGAGACTCCAAATGA

Upstream 100 bases:

>100_bases
GCTACGATCGCAAATCCTTGTTGAATCCGCGCTTTTTCTGCGTCTCTTAATCATCCCCGTCGCGCGGACATCCTGATCCG
CGCCGGAAACGGGGATCATG

Downstream 100 bases:

>100_bases
AAGCAAAGAAGACCCGGCTGCTGGCCGGGACCGCCCTCGATCGCCTCGGCGTGCTGGCCGTCACGTCCGCCGGGCTTCTC
ATCACCGCGCCGGCGCACGC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MASSWTDTEARSRGARMLRTAIGPMVGHWLTDPLVVEVMLNPDGCLWVDRLGTGLADTGRRLAPADAERIIRLVAHHVGV
EVHARNPRVSAELPETGERFEGLLPPVVTAPAFAIRKPAVAVYTLADYVAAGIMSQPQADAMRAGVMERLNILVAGGTGT
GKTTLTNALLAEVAQTGDRVVLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGSALGALRRMEQLIQEAVVTVPRALIAETINLVAVLVRDGHGRRLAELARVEGLGADGDYRLILLPS
EQAGDSK

Sequences:

>Translated_327_residues
MASSWTDTEARSRGARMLRTAIGPMVGHWLTDPLVVEVMLNPDGCLWVDRLGTGLADTGRRLAPADAERIIRLVAHHVGV
EVHARNPRVSAELPETGERFEGLLPPVVTAPAFAIRKPAVAVYTLADYVAAGIMSQPQADAMRAGVMERLNILVAGGTGT
GKTTLTNALLAEVAQTGDRVVLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
GTGHPGGIGTIHAGSALGALRRMEQLIQEAVVTVPRALIAETINLVAVLVRDGHGRRLAELARVEGLGADGDYRLILLPS
EQAGDSK
>Mature_326_residues
ASSWTDTEARSRGARMLRTAIGPMVGHWLTDPLVVEVMLNPDGCLWVDRLGTGLADTGRRLAPADAERIIRLVAHHVGVE
VHARNPRVSAELPETGERFEGLLPPVVTAPAFAIRKPAVAVYTLADYVAAGIMSQPQADAMRAGVMERLNILVAGGTGTG
KTTLTNALLAEVAQTGDRVVLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAWG
TGHPGGIGTIHAGSALGALRRMEQLIQEAVVTVPRALIAETINLVAVLVRDGHGRRLAELARVEGLGADGDYRLILLPSE
QAGDSK

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34739; Mature: 34607

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSWTDTEARSRGARMLRTAIGPMVGHWLTDPLVVEVMLNPDGCLWVDRLGTGLADTGR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHCCCHHHCCC
RLAPADAERIIRLVAHHVGVEVHARNPRVSAELPETGERFEGLLPPVVTAPAFAIRKPAV
CCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHCCCCCHHHCCHHHHCCCCH
AVYTLADYVAAGIMSQPQADAMRAGVMERLNILVAGGTGTGKTTLTNALLAEVAQTGDRV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
VLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGSALGALRRMEQLIQEAVVTVPRALIAETINLVAVLVRDGHGRRLAE
CCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHH
LARVEGLGADGDYRLILLPSEQAGDSK
HHHHHCCCCCCCEEEEEEECCCCCCCC
>Mature Secondary Structure 
ASSWTDTEARSRGARMLRTAIGPMVGHWLTDPLVVEVMLNPDGCLWVDRLGTGLADTGR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEHHHHCCCHHHCCC
RLAPADAERIIRLVAHHVGVEVHARNPRVSAELPETGERFEGLLPPVVTAPAFAIRKPAV
CCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCHHHHHCCCCCHHHCCHHHHCCCCH
AVYTLADYVAAGIMSQPQADAMRAGVMERLNILVAGGTGTGKTTLTNALLAEVAQTGDRV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
VLIEDTRELQCAAPNLVAMRTKDGVASLSDLVRSSLRLRPDRIPIGEVRGAEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGSALGALRRMEQLIQEAVVTVPRALIAETINLVAVLVRDGHGRRLAE
CCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHH
LARVEGLGADGDYRLILLPSEQAGDSK
HHHHHCCCCCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]