| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is trbE [H]
Identifier: 103488089
GI number: 103488089
Start: 2752264
End: 2754753
Strand: Reverse
Name: trbE [H]
Synonym: Sala_2611
Alternate gene names: 103488089
Gene position: 2754753-2752264 (Counterclockwise)
Preceding gene: 103488090
Following gene: 103488088
Centisome position: 82.35
GC content: 64.78
Gene sequence:
>2490_bases ATGATGAATTTGTCCGAATATCGCAGCCGCGCTACGTCTCTTGCCGACTTCTTGCCCTGGGTCGCACTGGTGGCGCCGGG CGTGGTGCTTAACAAGGACGGATCGTTCCAGCGCACCGCGCGCTTTCGCGGTCCCGATCTCGACAGCGCCACGCCCGCCG AACTGGTTTCGGTGACCGCGCGACTCAACAATGCGCTGCGCCGTCTCGGTTCGGGTTGGGCGGTGTTCGTGGAAGCACAG CGCGTTCCCGCGCTGGACTATCCGAACAGTGCGTTTCCCGATCCGGTATCGGCACTCGTCGATATGGAGCGGGGCGAGCA GTTCCGGGAAGCGGGAAGCCATTTCGAGAGCGGCTATTATCTGACGCTGCTCTGGATGCCGCCCGCCGAAGAGGCCGCCC GCGCGGAGAACTGGCTCTATGAAGGCCGTTCGGGCGGCGGCGTCGATCCGCATGAGCAACTGGCCGGCTTCATCGATCGG ACGAACCGGGTGCTCCATCTGGTCGAAGGCTTCATGCCTGAGGTGGGCTGGCTCGATGACGCCGAGACCCTGACCTATCT CCATTCATGCGTATCGACCAGGCGCCAGCGCGTGCGGGTGCCCGAGACACCTTGCTATCTCGATGCACTGCTCACCGATG AGGGCCTGACCGGCGGGCTCGAGCCGAAGCTGGGCGAGCATCATCTGCGCGTGGCTACAGCCACCGGCTTTCCAACGGCG ACCTTTCCGAGCCTGCTCGACGAACTGAACCGGCTGGCCTTCCCCTATCGCTGGTCGACGCGGGCGATCATGCTCGACAA GACCGACGCCACCAAATTGCTGACGAAGATCCGGCGCCAGTGGTTCGCCAAGCGCAAGAGCGTCGCCGCGATCCTGAAAG AGGTGATGACCAACGAAGCATCGGTGCTGACCGATAGCGATGCGTCGAACAAGGCGGCCGATGCGGACCTCGCTTTGCAG GAGCTCGGCGCGGACCATTCGGGGATCGCCTATGTAACCGCCACCGTGACGGTGTGGGATCGCGATCCTGCATTGGCGGC TGAGAAGCTGCGGCTGGTCGAGAAGATCATCCAGGGCCGCGACTTCACGGCGACAATCGAGGGCATGAACGCGATCGAGG CCTGGCTCGGGTCATTGCCCGGCCATGTCTATGCCAACGTTCGCCAGCCTCCGATTTCCACGCTCAATCTCGCCCACCTG ATCCCCCTGTCAGCGGTGTGGGCGGGGGCGGAACGGGACGAGCATTTCGGTGATGCCCCCTTGCTTTATGGCAAGACCGA AGGCTCGACCCCGTTCCGTCTTTCGCTTCATGTCGGCGATGTCGGCCATACGCTGATCGTCGGGCCGACGGGTGCCGGCA AGTCGGTGCTGCTGGCGCTGATGGCAATGCAGTTCCGCCGCTATGCCGACAATCAGATCTTCGCCTTCGACTTCGGCGGC TCGATCCGGGCGGCAGCGATCGCCTGTGGCGGCGACTGGCAGGATCTCGGCGGCGCACTGCATGACCGGGACGGTGGAGA GGGGGTGACCCTGCAACCGCTTGCCCGGATCGACGATCCCGGCGAGCGTGCCTGGGCTGCGGAATGGCTTGCAGCCATCC TTTCCAGTGAAGGCGTCACGGTCGATCCCGCCGCCAAGGAGCATCTGTGGACCGCGCTCGGATCGCTCGCCTCGGCGCCG CCGCCCGAGCGCACGCTCACCGGGCTGGCCGTGCTCCTGCAAAGCCAAGAGCTGAAACAGGCGCTCGCCCCTTATTGCGT CGGCGGACCCTGGGGGCGGCTGCTCGATGCCGAAGCCGAACATCTGGGTGAGGCGAGTTTCCAGGCATTCGAGACCGAAG GGCTGGTCGGCGCGGCATCGGCCGCCGCGGTGCTCGCCTATCTCTTCCACCGGATCGAAGGTCGGCTCGACGGGCGCCCC ACGCTCATCATCATCGACGAGGGCTGGTTGGTACTCGACAGCCCGGCCTTTGCCGCGCAGCTTCGTGAATGGCTGAAGAC CCTGCGCAAGAAGAATTCATCGGTCATCTTCGCGACCCAGAGCCTGGCCGACATCGAAACGTCGAGCATTGCGCCCGCCA TCATCGAAAGCTGCCCGACGCGCATCTTCCTTCCCAATGAGCGCGCCGCCGAGCCGCAGATCGCACGCGTATATGAGCGC TTCGGGCTCAACGATCGCCAGATCGAGATATTGAGCCGGGCAACGCCCAAGCGCGATTATTATTGTCAGTCGCGGCGCGG CAACCGGCTGTTCGAACTGGGCCTGGGCGAAGTCGCGCTGGCCTTCACCGCCGCATCGTCAAAGTCCGACCAGATCCGCA TCGGCGAGCTCGTCGCCAAGCATGGGACGCACGCCTTCGCCGCCCATTGGCTCAGGCACCGCGGCCTCTATTGGGCCGCC GCCCTGCTGCCCGAACCCGATCCGCTGACTGCATCCATCCCGAGCGACGAGCTCTTGCTGCCGCTCGATCCCGAGGAGTT ACGCTCATGA
Upstream 100 bases:
>100_bases GGGCGATCGGCCATGCACTGTCGGTCTGGGCCGCGCGGCGCGATCCGCAGTTTGTCGATGTCGCCCGCCGCCACCTCAAA TATCCGGTCTGGATGCGGCC
Downstream 100 bases:
>100_bases AGAAATATCCGCTTCGCCGCGCCCTGCTGGCCGGCGCTATCGCTCTGTCCGTCACCGGTACGATGACCGCCGTTCCGGCA CAGGCGCAGTTCGGTTTCGG
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MMNLSEYRSRATSLADFLPWVALVAPGVVLNKDGSFQRTARFRGPDLDSATPAELVSVTARLNNALRRLGSGWAVFVEAQ RVPALDYPNSAFPDPVSALVDMERGEQFREAGSHFESGYYLTLLWMPPAEEAARAENWLYEGRSGGGVDPHEQLAGFIDR TNRVLHLVEGFMPEVGWLDDAETLTYLHSCVSTRRQRVRVPETPCYLDALLTDEGLTGGLEPKLGEHHLRVATATGFPTA TFPSLLDELNRLAFPYRWSTRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEASVLTDSDASNKAADADLALQ ELGADHSGIAYVTATVTVWDRDPALAAEKLRLVEKIIQGRDFTATIEGMNAIEAWLGSLPGHVYANVRQPPISTLNLAHL IPLSAVWAGAERDEHFGDAPLLYGKTEGSTPFRLSLHVGDVGHTLIVGPTGAGKSVLLALMAMQFRRYADNQIFAFDFGG SIRAAAIACGGDWQDLGGALHDRDGGEGVTLQPLARIDDPGERAWAAEWLAAILSSEGVTVDPAAKEHLWTALGSLASAP PPERTLTGLAVLLQSQELKQALAPYCVGGPWGRLLDAEAEHLGEASFQAFETEGLVGAASAAAVLAYLFHRIEGRLDGRP TLIIIDEGWLVLDSPAFAAQLREWLKTLRKKNSSVIFATQSLADIETSSIAPAIIESCPTRIFLPNERAAEPQIARVYER FGLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLGEVALAFTAASSKSDQIRIGELVAKHGTHAFAAHWLRHRGLYWAA ALLPEPDPLTASIPSDELLLPLDPEELRS
Sequences:
>Translated_829_residues MMNLSEYRSRATSLADFLPWVALVAPGVVLNKDGSFQRTARFRGPDLDSATPAELVSVTARLNNALRRLGSGWAVFVEAQ RVPALDYPNSAFPDPVSALVDMERGEQFREAGSHFESGYYLTLLWMPPAEEAARAENWLYEGRSGGGVDPHEQLAGFIDR TNRVLHLVEGFMPEVGWLDDAETLTYLHSCVSTRRQRVRVPETPCYLDALLTDEGLTGGLEPKLGEHHLRVATATGFPTA TFPSLLDELNRLAFPYRWSTRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEASVLTDSDASNKAADADLALQ ELGADHSGIAYVTATVTVWDRDPALAAEKLRLVEKIIQGRDFTATIEGMNAIEAWLGSLPGHVYANVRQPPISTLNLAHL IPLSAVWAGAERDEHFGDAPLLYGKTEGSTPFRLSLHVGDVGHTLIVGPTGAGKSVLLALMAMQFRRYADNQIFAFDFGG SIRAAAIACGGDWQDLGGALHDRDGGEGVTLQPLARIDDPGERAWAAEWLAAILSSEGVTVDPAAKEHLWTALGSLASAP PPERTLTGLAVLLQSQELKQALAPYCVGGPWGRLLDAEAEHLGEASFQAFETEGLVGAASAAAVLAYLFHRIEGRLDGRP TLIIIDEGWLVLDSPAFAAQLREWLKTLRKKNSSVIFATQSLADIETSSIAPAIIESCPTRIFLPNERAAEPQIARVYER FGLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLGEVALAFTAASSKSDQIRIGELVAKHGTHAFAAHWLRHRGLYWAA ALLPEPDPLTASIPSDELLLPLDPEELRS >Mature_829_residues MMNLSEYRSRATSLADFLPWVALVAPGVVLNKDGSFQRTARFRGPDLDSATPAELVSVTARLNNALRRLGSGWAVFVEAQ RVPALDYPNSAFPDPVSALVDMERGEQFREAGSHFESGYYLTLLWMPPAEEAARAENWLYEGRSGGGVDPHEQLAGFIDR TNRVLHLVEGFMPEVGWLDDAETLTYLHSCVSTRRQRVRVPETPCYLDALLTDEGLTGGLEPKLGEHHLRVATATGFPTA TFPSLLDELNRLAFPYRWSTRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEASVLTDSDASNKAADADLALQ ELGADHSGIAYVTATVTVWDRDPALAAEKLRLVEKIIQGRDFTATIEGMNAIEAWLGSLPGHVYANVRQPPISTLNLAHL IPLSAVWAGAERDEHFGDAPLLYGKTEGSTPFRLSLHVGDVGHTLIVGPTGAGKSVLLALMAMQFRRYADNQIFAFDFGG SIRAAAIACGGDWQDLGGALHDRDGGEGVTLQPLARIDDPGERAWAAEWLAAILSSEGVTVDPAAKEHLWTALGSLASAP PPERTLTGLAVLLQSQELKQALAPYCVGGPWGRLLDAEAEHLGEASFQAFETEGLVGAASAAAVLAYLFHRIEGRLDGRP TLIIIDEGWLVLDSPAFAAQLREWLKTLRKKNSSVIFATQSLADIETSSIAPAIIESCPTRIFLPNERAAEPQIARVYER FGLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLGEVALAFTAASSKSDQIRIGELVAKHGTHAFAAHWLRHRGLYWAA ALLPEPDPLTASIPSDELLLPLDPEELRS
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 90535; Mature: 90535
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNLSEYRSRATSLADFLPWVALVAPGVVLNKDGSFQRTARFRGPDLDSATPAELVSVTA CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHH RLNNALRRLGSGWAVFVEAQRVPALDYPNSAFPDPVSALVDMERGEQFREAGSHFESGYY HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE LTLLWMPPAEEAARAENWLYEGRSGGGVDPHEQLAGFIDRTNRVLHLVEGFMPEVGWLDD EEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AETLTYLHSCVSTRRQRVRVPETPCYLDALLTDEGLTGGLEPKLGEHHLRVATATGFPTA HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCH TFPSLLDELNRLAFPYRWSTRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEA HHHHHHHHHHHHCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SVLTDSDASNKAADADLALQELGADHSGIAYVTATVTVWDRDPALAAEKLRLVEKIIQGR CEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCC DFTATIEGMNAIEAWLGSLPGHVYANVRQPPISTLNLAHLIPLSAVWAGAERDEHFGDAP CCEEEECCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC LLYGKTEGSTPFRLSLHVGDVGHTLIVGPTGAGKSVLLALMAMQFRRYADNQIFAFDFGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SIRAAAIACGGDWQDLGGALHDRDGGEGVTLQPLARIDDPGERAWAAEWLAAILSSEGVT CCEEEEEEECCCHHHHCCCCCCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHHCCCCCE VDPAAKEHLWTALGSLASAPPPERTLTGLAVLLQSQELKQALAPYCVGGPWGRLLDAEAE ECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHCHHHH HLGEASFQAFETEGLVGAASAAAVLAYLFHRIEGRLDGRPTLIIIDEGWLVLDSPAFAAQ HCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCHHHHH LREWLKTLRKKNSSVIFATQSLADIETSSIAPAIIESCPTRIFLPNERAAEPQIARVYER HHHHHHHHHCCCCCEEEEECCHHHCCHHCCCHHHHHHCCCEEECCCCCCCCHHHHHHHHH FGLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLGEVALAFTAASSKSDQIRIGELVAK HCCCCCHHHHHHHCCCCCCCEECCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHH HGTHAFAAHWLRHRGLYWAAALLPEPDPLTASIPSDELLLPLDPEELRS CCCHHHHHHHHHHCCHHEEEECCCCCCCCEECCCCCCEEECCCHHHHCC >Mature Secondary Structure MMNLSEYRSRATSLADFLPWVALVAPGVVLNKDGSFQRTARFRGPDLDSATPAELVSVTA CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCHHHHHHHHH RLNNALRRLGSGWAVFVEAQRVPALDYPNSAFPDPVSALVDMERGEQFREAGSHFESGYY HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE LTLLWMPPAEEAARAENWLYEGRSGGGVDPHEQLAGFIDRTNRVLHLVEGFMPEVGWLDD EEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AETLTYLHSCVSTRRQRVRVPETPCYLDALLTDEGLTGGLEPKLGEHHLRVATATGFPTA HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCH TFPSLLDELNRLAFPYRWSTRAIMLDKTDATKLLTKIRRQWFAKRKSVAAILKEVMTNEA HHHHHHHHHHHHCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SVLTDSDASNKAADADLALQELGADHSGIAYVTATVTVWDRDPALAAEKLRLVEKIIQGR CEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCC DFTATIEGMNAIEAWLGSLPGHVYANVRQPPISTLNLAHLIPLSAVWAGAERDEHFGDAP CCEEEECCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC LLYGKTEGSTPFRLSLHVGDVGHTLIVGPTGAGKSVLLALMAMQFRRYADNQIFAFDFGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SIRAAAIACGGDWQDLGGALHDRDGGEGVTLQPLARIDDPGERAWAAEWLAAILSSEGVT CCEEEEEEECCCHHHHCCCCCCCCCCCCCEECHHHHCCCCCHHHHHHHHHHHHHCCCCCE VDPAAKEHLWTALGSLASAPPPERTLTGLAVLLQSQELKQALAPYCVGGPWGRLLDAEAE ECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHHCHHHH HLGEASFQAFETEGLVGAASAAAVLAYLFHRIEGRLDGRPTLIIIDEGWLVLDSPAFAAQ HCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEECCHHHHH LREWLKTLRKKNSSVIFATQSLADIETSSIAPAIIESCPTRIFLPNERAAEPQIARVYER HHHHHHHHHCCCCCEEEEECCHHHCCHHCCCHHHHHHCCCEEECCCCCCCCHHHHHHHHH FGLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLGEVALAFTAASSKSDQIRIGELVAK HCCCCCHHHHHHHCCCCCCCEECCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHH HGTHAFAAHWLRHRGLYWAAALLPEPDPLTASIPSDELLLPLDPEELRS CCCHHHHHHHHHHCCHHEEEECCCCCCCCEECCCCCCEEECCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]