The gene/protein map for NC_008048 is currently unavailable.
Definition Sphingopyxis alaskensis RB2256, complete genome.
Accession NC_008048
Length 3,345,170

Click here to switch to the map view.

The map label for this gene is 103488071

Identifier: 103488071

GI number: 103488071

Start: 2734387

End: 2734776

Strand: Reverse

Name: 103488071

Synonym: Sala_2593

Alternate gene names: NA

Gene position: 2734776-2734387 (Counterclockwise)

Preceding gene: 103488072

Following gene: 103488053

Centisome position: 81.75

GC content: 63.85

Gene sequence:

>390_bases
GTGAGCGAAGCCGTCCTCGATGCGTCGGCGCTGTTGGCATTGCTGAAGGAAGAGGCTGGAGCGGCAAAGGTGGCGGATGC
GATCGCCGCGTCGCGGATGACCTCGGTCAATTACGCCGAGGTGGTGAGCCATTTCATTCATGCGGGCATGCCTGCGAATG
AAGTCGATGCCATGCTGCATCCCCTGCCGATGGAGATAGTCGAAGCAGACCAGGCCTTGGCGACCATCGCCGGGAGGCTG
AGGGCCGTGACCGTCGAGGCGGGCCTGTCCCTTGGCGAAAGATTCTGCCTGGCGCTCGCGCTGCGCGACGGGTTGCCCGC
TCTCACGGCGGACAAGACGTGGCGGACGATAGCGGATGCTGCCGGGGTGAAAGTCCAGGTCATTCGATAG

Upstream 100 bases:

>100_bases
CGATCGCGCATGCGCAGGCGCTCGCGAAAAAATACACCGCCGGAAAGCCCGAGGCGTCGGTTGATGCGTTCCTCGCGGGC
CGTCGCGAGGACTCCGGCGA

Downstream 100 bases:

>100_bases
GCAGGCATCAATCGCGGCCCCTGAAGCGCCTGAACCGTGCCTTCGCATCGGCCTCCTCGATCGCCAGGCCCGCATTCGCA
CATTCTTCGCCGCGCACGGT

Product: PilT protein-like protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLHPLPMEIVEADQALATIAGRL
RAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADAAGVKVQVIR

Sequences:

>Translated_129_residues
MSEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLHPLPMEIVEADQALATIAGRL
RAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADAAGVKVQVIR
>Mature_128_residues
SEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLHPLPMEIVEADQALATIAGRLR
AVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADAAGVKVQVIR

Specific function: Unknown

COG id: COG4374

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13477; Mature: 13346

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLH
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC
PLPMEIVEADQALATIAGRLRAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC
AGVKVQVIR
CCCEEEEEC
>Mature Secondary Structure 
SEAVLDASALLALLKEEAGAAKVADAIAASRMTSVNYAEVVSHFIHAGMPANEVDAMLH
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHC
PLPMEIVEADQALATIAGRLRAVTVEAGLSLGERFCLALALRDGLPALTADKTWRTIADA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC
AGVKVQVIR
CCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA