| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487570
Identifier: 103487570
GI number: 103487570
Start: 2193821
End: 2195500
Strand: Direct
Name: 103487570
Synonym: Sala_2089
Alternate gene names: NA
Gene position: 2193821-2195500 (Clockwise)
Preceding gene: 103487568
Following gene: 103487571
Centisome position: 65.58
GC content: 70.65
Gene sequence:
>1680_bases ATGCGCCCTTCGTCATGGGCAGACCGGCTGCTCGCGCTCTCGGCCCGCTTCGTCGGGTTCGTCATCCTCATCGCCACGCT CGCCGCCGCGGCGGGCAGCTTCTTTTACAATCGCGCCGACGAGCGCGCCCGCGCCGAGCGCGTCGCGATGCAGATCGACA CGCGGCTGCGCGATCATGTCGCGCTGCTCGAAGGGGTGCGCGCGCTCTATCGGTCGGACAGCCGGTCGAGCGGTCCCGGC GTCCGCGCCTATCTCAACGCGCTGCAGCCGCAGGTCCATGCGCCGGGGCTGGAGGGGATCGGCATCGCGGTCGCGATGCG CCAGCGGACCCCCGCCGCGGCCGAGGCGATGCTGCGCGAAAATTACGGCCGCGACATTGCGGTCTGGCCGGTCAGCGACC AGCCCATCGGCTTTCCGATCGTCCTGCTCGAACCTCCGACGCCGCGCCGCGACCAGGCGCTGGGGTATGACATGTACAGC GAGCCGGTACGCCGCGCGGCGATGCGCCGGGCCTGGCAGACGGGAGCGCCCGCGGCGAGCGGCATCGTCGAGCTGGTGCA GGAAGGGGCGGCGACGCGGCGCCAGGCGGGGTTCCTCATCTATGTCCCCGTCTATGCCGACCAGCCGGCGCCCGGCGTCG GCGCCCCTGCGCTCCCCGGCGACCCGCCGCGCGCCGCGACCCGTGCCAGCGCGCCGGGCGCGCGGCCGATCGAGGCGTTC GTCTATGCGCCCTTCCGCATCGACGACCTGATGACCGCAATCCTCGGCGCGCAGCTCGACACGATCGACGGGATCGAAAT CCGTGCCGGCGAAGGACCGGCGGCGCCGCTCGCCTATCGTCACGGCACGATGGGCTGGGACCCGCACGAACAGGTGCTGC GCGTCGCCGACCGCCAGTGGACGATGCGCATTTCCTACAGCCGCCTGTTCGAGCGGCTCGGCCGGCCGGTCGCCATCTTC CTCTTCGGCTTTGCGATCATGCTGCTCGCAATGCAGCTCATGCGGCTCCAGCACCGCCGCGTCGACGCCTTTCGCGCGCT CGCCGACGAACAGGCGCTGCGCGCCGCAGACCGCGAGCTGATGATCGGCGAAATGGCGCACCGGATGAAGAACGCCTTTG CGCGCATCGGCGCGCTCGCGCGCATAACCTTGCGCGAATCGGCCAGCCTCGACGAGTTCGAGGCGAAGTTCGACGGCCGG ATGCGCGCGCTGTCCGATGCCAAGCAGATGCTCGTCACCGGCGCGGTCGACACGGTCGAACTCGAACGCATCGTCCACCG CGAGCTCGACCTCGCCGGGGTTCCACCCGACCGGCTTGCCGCCATCACCGGCCCCGCGGTGCGGCTCGATGACGAGGGCG CGCAGGCGATCTCGCTCGCGGTCCACGAATTCGTCACCAACAGCATCAAATATGGCGCGCTGGCGGGCGAGGGCGAGCTC AGCGTCGGCTGGCACCGCGAGGATGGTCAGGTGACGCTCGACTGGACCGAAAGCGGGCTGCCCGAAACCCCGAATATCGA GCAGGAAAGTTTCGGCACCCGGTTCATCCGCACGCTGATCGAACGTCAGCTCAAAGGGAGATGGACGCGCACCGCCGCCG CGGGGCGGCTCTCGATCGTCATCCGCTGGCCCGATGCCGCCTCGGCGACCGGCGCGACCGCAGCGTCGCCCGCACGTTGA
Upstream 100 bases:
>100_bases CCGTTATGGTATGAAATAAACTTGCCATCGGCGGCGCGGCATGGAAGATCGGGCGCCAGAGGGGGGCGCTGCTGCGGCAG CCAGCAGGCAGGACAGAGAC
Downstream 100 bases:
>100_bases CAAGCCGCGTCCTCCCGGCGAGAGACGGGCCGGGAGGGGGAGAGACGCCGCCATGACCGCAAAGATGCTGCGCCCGACTT CGTTCGACGTCGCCGAGCGC
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: EL360-LOV-histidine kinase; EL360-LOV-HK [H]
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHVALLEGVRALYRSDSRSSGPG VRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRENYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYS EPVRRAAMRRAWQTGAPAASGIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQWTMRISYSRLFERLGRPVAIF LFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADRELMIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGR MRALSDAKQMLVTGAVDTVELERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIVIRWPDAASATGATAASPAR
Sequences:
>Translated_559_residues MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHVALLEGVRALYRSDSRSSGPG VRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRENYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYS EPVRRAAMRRAWQTGAPAASGIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQWTMRISYSRLFERLGRPVAIF LFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADRELMIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGR MRALSDAKQMLVTGAVDTVELERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIVIRWPDAASATGATAASPAR >Mature_559_residues MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHVALLEGVRALYRSDSRSSGPG VRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRENYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYS EPVRRAAMRRAWQTGAPAASGIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQWTMRISYSRLFERLGRPVAIF LFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADRELMIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGR MRALSDAKQMLVTGAVDTVELERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIVIRWPDAASATGATAASPAR
Specific function: Photosensitive kinase that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG3614
COG function: function code T; Predicted periplasmic ligand-binding sensor domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR011102 [H]
Pfam domain/function: PF07536 HWE_HK; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 61149; Mature: 61149
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS50839 CHASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLEGVRALYRSDSRSSGPGVRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRE HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH NYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYSEPVRRAAMRRAWQTGAPAAS CCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH GIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF HHHHHHHHCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEE VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQW EECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCHH TMRISYSRLFERLGRPVAIFLFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADREL EEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGRMRALSDAKQMLVTGAVDTVE HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHH LERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL HHHHHHHHCCCCCCCHHHHHEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCE SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIV EEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCEEEEE IRWPDAASATGATAASPAR EECCCCCCCCCCCCCCCCC >Mature Secondary Structure MRPSSWADRLLALSARFVGFVILIATLAAAAGSFFYNRADERARAERVAMQIDTRLRDHV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALLEGVRALYRSDSRSSGPGVRAYLNALQPQVHAPGLEGIGIAVAMRQRTPAAAEAMLRE HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH NYGRDIAVWPVSDQPIGFPIVLLEPPTPRRDQALGYDMYSEPVRRAAMRRAWQTGAPAAS CCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH GIVELVQEGAATRRQAGFLIYVPVYADQPAPGVGAPALPGDPPRAATRASAPGARPIEAF HHHHHHHHCHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEE VYAPFRIDDLMTAILGAQLDTIDGIEIRAGEGPAAPLAYRHGTMGWDPHEQVLRVADRQW EECCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCHH TMRISYSRLFERLGRPVAIFLFGFAIMLLAMQLMRLQHRRVDAFRALADEQALRAADREL EEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MIGEMAHRMKNAFARIGALARITLRESASLDEFEAKFDGRMRALSDAKQMLVTGAVDTVE HHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHH LERIVHRELDLAGVPPDRLAAITGPAVRLDDEGAQAISLAVHEFVTNSIKYGALAGEGEL HHHHHHHHCCCCCCCHHHHHEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCE SVGWHREDGQVTLDWTESGLPETPNIEQESFGTRFIRTLIERQLKGRWTRTAAAGRLSIV EEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCEEEEE IRWPDAASATGATAASPAR EECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA