Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 103487555

GI number: 103487555

Start: 2181312

End: 2181833

Strand: Direct

Name: (hspc4-1 [H]

Synonym: Sala_2074

Alternate gene names: 103487555

Gene position: 2181312-2181833 (Clockwise)

Preceding gene: 103487554

Following gene: 103487556

Centisome position: 65.21

GC content: 64.94

Gene sequence:

>522_bases
ATGTCACTTCGTGATCTCATTCCCTGGAGCCGGCAGGACAATCGGCTCCCCATATCCACGGACCCGCAGGGCGGCGGGGA
CTATGACGCGTATCCGCTGCTTTCGCTGCACCGCGAGGTAAACCGCCTGTTCGACGATATGTTTCGCGGCTTTGGCGGCG
CGCTGCCGGGGCGGCTCGACCCGCGCGGCGTGTGGCCCCATGTCGAGCTTAGTGAAACCGACAGCGAGGTCCGCATTGCC
GCCGAACTGCCGGGGCTTGACGAGAAGGACGTCGAGCTTTGCATCGAGGAGGGCGTACTGACCCTGCGCGGCGAGAAACG
TGCGGACGTCGAAGACCGCGATCGCGGCTATTCGGAGCGAAGCTATGGCCGCTTTGAACGGCGCATCAGCCTGCCGCAGG
GTATCGACCGCGAACAGGCGAACGCGACGTTCAGGAACGGCGTGCTCACCGTGCGGCTGCCCCGGACGGAGGCGGCGAGG
AAAAATGTTCGCCGCATCCCGATCAATGGCAAAGCCGCCTGA

Upstream 100 bases:

>100_bases
TCCGCCTGACCGATGCGAAAAAGCCGAAACGCCGTCCGGCACCGCCGCGCAAGGCGGGCCGGTCGGCCACCTTGTTCCAG
TGCCTAAGGAGATGATCATC

Downstream 100 bases:

>100_bases
CACGGCCGCCCGGGCCGTCCGCCCCGCGATGGTCGCCAACGACAATCGGCCCGGACGGCCCGGGTGGTCCGGAACCAGCG
GGTCGATCCCCGACGATGCA

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MSLRDLIPWSRQDNRLPISTDPQGGGDYDAYPLLSLHREVNRLFDDMFRGFGGALPGRLDPRGVWPHVELSETDSEVRIA
AELPGLDEKDVELCIEEGVLTLRGEKRADVEDRDRGYSERSYGRFERRISLPQGIDREQANATFRNGVLTVRLPRTEAAR
KNVRRIPINGKAA

Sequences:

>Translated_173_residues
MSLRDLIPWSRQDNRLPISTDPQGGGDYDAYPLLSLHREVNRLFDDMFRGFGGALPGRLDPRGVWPHVELSETDSEVRIA
AELPGLDEKDVELCIEEGVLTLRGEKRADVEDRDRGYSERSYGRFERRISLPQGIDREQANATFRNGVLTVRLPRTEAAR
KNVRRIPINGKAA
>Mature_172_residues
SLRDLIPWSRQDNRLPISTDPQGGGDYDAYPLLSLHREVNRLFDDMFRGFGGALPGRLDPRGVWPHVELSETDSEVRIAA
ELPGLDEKDVELCIEEGVLTLRGEKRADVEDRDRGYSERSYGRFERRISLPQGIDREQANATFRNGVLTVRLPRTEAARK
NVRRIPINGKAA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19627; Mature: 19496

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRDLIPWSRQDNRLPISTDPQGGGDYDAYPLLSLHREVNRLFDDMFRGFGGALPGRLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PRGVWPHVELSETDSEVRIAAELPGLDEKDVELCIEEGVLTLRGEKRADVEDRDRGYSER
CCCCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCHHHCCCCCH
SYGRFERRISLPQGIDREQANATFRNGVLTVRLPRTEAARKNVRRIPINGKAA
HHHHHHHHCCCCCCCCHHHHCCHHHCCEEEEEECCCHHHHCCCEECCCCCCCC
>Mature Secondary Structure 
SLRDLIPWSRQDNRLPISTDPQGGGDYDAYPLLSLHREVNRLFDDMFRGFGGALPGRLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PRGVWPHVELSETDSEVRIAAELPGLDEKDVELCIEEGVLTLRGEKRADVEDRDRGYSER
CCCCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHCCEEEECCCCCCCCCHHHCCCCCH
SYGRFERRISLPQGIDREQANATFRNGVLTVRLPRTEAARKNVRRIPINGKAA
HHHHHHHHCCCCCCCCHHHHCCHHHCCEEEEEECCCHHHHCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA