| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487553
Identifier: 103487553
GI number: 103487553
Start: 2179551
End: 2180423
Strand: Direct
Name: 103487553
Synonym: Sala_2072
Alternate gene names: NA
Gene position: 2179551-2180423 (Clockwise)
Preceding gene: 103487543
Following gene: 103487554
Centisome position: 65.16
GC content: 71.59
Gene sequence:
>873_bases ATGCGCCGCTTCACTCATTTCGCCGCCCTCGACTGGTCGGGCGCGCGCGGCGAACGCCAGCGCGGCATCGCGCTCGCCGT CGCCAATGGCAAGGGCGCCCCGGCGCTCGTCCGTCCAGGGCATGTCTGGTCGCGCGCGGAGATATTGGCGTGGCTGGAGG GCGTCGCAGAAACCGGTGCCGATATGCTGATCGGCGTTGATTTTTCGGCCGCCTTCGCCTTTGCCGACCGCGGCGGCTAT TTCCCCGAATGGGACGAGAGCCCGCCCGACATGCCCGCGCTCTGGTCGCTCGTCGAACGGCTCGCGGCCGCCGACCCGCA TTATGAGGCAGGCAGCTTTCTGCACCACCCCGAGGCCCGGCGCCATTTCCGCCACGGCCGCGGCGATGTCGGCGACCTGT TCGCGCCGGGCGCGGGGCGGCTGCGCGTCGTCGAACAGCATCAGCGCGCGACGCGGCAGGCGGCAAGCGTCAGCAATTTC AACCTCGTCGGCGCGGCGCAGGTCGGCAAGGCGAGTCTTTCGGGCATGCGGCTGCTGCACCGGCTGCGCGGACGCATCCC GCTCTGGCCGCTCGACCCGGCGCCCGACAAAGGCCCGCTGCTCGTCGAAATCTACACCAGCCTTGCCGCGCGCGCCGCGG GAATCCGGCCCGGCCGCAGCAAGATCCGCAACGGCGCGGCGCTCGATATCGCGCTCGCAATGCTCGGCTCGCCGCCCGCC GACATCGCCGGGCCGATAAGCGATCATGCCGCCGACGCGCTGCTCGCCGCGGCGTGGCTGCGCGACATAGCGGCGAACGC CGCCCCCTGGTCGCCAGCCCCGCTCTCCGACGCGCTCGCGCGAACCGAGGGCTGGACCTTTGGCATCATCTGA
Upstream 100 bases:
>100_bases TCGCGGGATTGGGCGTCGATTCGGTTTCGATGAGCATGAGGCGCATGTGGGATGCCATCGCCCTTTGTGCAAGCGCGATT GGGGCGTTAGGGGCGGTTCC
Downstream 100 bases:
>100_bases GATTTTTCCGGCAGGACGCATTTTCCGCTCGCCAGATATTTCCATCCGCCCGAAAAACGCCTAGGGGCGCGCGAGACGCC GGCTTAGCTCAGTTGGTAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MRRFTHFAALDWSGARGERQRGIALAVANGKGAPALVRPGHVWSRAEILAWLEGVAETGADMLIGVDFSAAFAFADRGGY FPEWDESPPDMPALWSLVERLAAADPHYEAGSFLHHPEARRHFRHGRGDVGDLFAPGAGRLRVVEQHQRATRQAASVSNF NLVGAAQVGKASLSGMRLLHRLRGRIPLWPLDPAPDKGPLLVEIYTSLAARAAGIRPGRSKIRNGAALDIALAMLGSPPA DIAGPISDHAADALLAAAWLRDIAANAAPWSPAPLSDALARTEGWTFGII
Sequences:
>Translated_290_residues MRRFTHFAALDWSGARGERQRGIALAVANGKGAPALVRPGHVWSRAEILAWLEGVAETGADMLIGVDFSAAFAFADRGGY FPEWDESPPDMPALWSLVERLAAADPHYEAGSFLHHPEARRHFRHGRGDVGDLFAPGAGRLRVVEQHQRATRQAASVSNF NLVGAAQVGKASLSGMRLLHRLRGRIPLWPLDPAPDKGPLLVEIYTSLAARAAGIRPGRSKIRNGAALDIALAMLGSPPA DIAGPISDHAADALLAAAWLRDIAANAAPWSPAPLSDALARTEGWTFGII >Mature_290_residues MRRFTHFAALDWSGARGERQRGIALAVANGKGAPALVRPGHVWSRAEILAWLEGVAETGADMLIGVDFSAAFAFADRGGY FPEWDESPPDMPALWSLVERLAAADPHYEAGSFLHHPEARRHFRHGRGDVGDLFAPGAGRLRVVEQHQRATRQAASVSNF NLVGAAQVGKASLSGMRLLHRLRGRIPLWPLDPAPDKGPLLVEIYTSLAARAAGIRPGRSKIRNGAALDIALAMLGSPPA DIAGPISDHAADALLAAAWLRDIAANAAPWSPAPLSDALARTEGWTFGII
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30964; Mature: 30964
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRFTHFAALDWSGARGERQRGIALAVANGKGAPALVRPGHVWSRAEILAWLEGVAETGA CCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHCCC DMLIGVDFSAAFAFADRGGYFPEWDESPPDMPALWSLVERLAAADPHYEAGSFLHHPEAR CEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH RHFRHGRGDVGDLFAPGAGRLRVVEQHQRATRQAASVSNFNLVGAAQVGKASLSGMRLLH HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH RLRGRIPLWPLDPAPDKGPLLVEIYTSLAARAAGIRPGRSKIRNGAALDIALAMLGSPPA HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCH DIAGPISDHAADALLAAAWLRDIAANAAPWSPAPLSDALARTEGWTFGII HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEECC >Mature Secondary Structure MRRFTHFAALDWSGARGERQRGIALAVANGKGAPALVRPGHVWSRAEILAWLEGVAETGA CCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHCCC DMLIGVDFSAAFAFADRGGYFPEWDESPPDMPALWSLVERLAAADPHYEAGSFLHHPEAR CEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH RHFRHGRGDVGDLFAPGAGRLRVVEQHQRATRQAASVSNFNLVGAAQVGKASLSGMRLLH HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH RLRGRIPLWPLDPAPDKGPLLVEIYTSLAARAAGIRPGRSKIRNGAALDIALAMLGSPPA HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCCH DIAGPISDHAADALLAAAWLRDIAANAAPWSPAPLSDALARTEGWTFGII HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA