Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is fur [H]
Identifier: 103487547
GI number: 103487547
Start: 2176080
End: 2176505
Strand: Reverse
Name: fur [H]
Synonym: Sala_2066
Alternate gene names: 103487547
Gene position: 2176505-2176080 (Counterclockwise)
Preceding gene: 103487548
Following gene: 103487546
Centisome position: 65.06
GC content: 61.03
Gene sequence:
>426_bases ATGTCCGGCAATATCGACCTTGAAGCGCTGTGCCACGAAAAGGGGCTGCGCATCACCGAACAGCGCCGCATCATCGCGCG TGTCATCTCGGAATCGGAGGATCACCCCGATGTCGAGACGCTCTATGATCGCGCGTCGAAGATCGACAGCGGCATTTCGA TCGCCACCGTTTACCGCACGGTGCGCCTGTTCGAGGAAGCGGGCATCCTCGACCGCCACGATTTTGGCGATGGCCGCTCG CGCTACGAAGCCGCGCCGGAGGCACATCACGACCATCTGATCGATGTCGAGACGGGCAAGGTGATCGAGTTTGTCGATCC CGAACTCGAAGCGTTGCAGAAGGTGATCGCCGAACGGCTGGGCTTCCGCCTCGTCGATCACCGCATGGAGCTTTACGGTG TCGCCATCGATCGCAAGCGCGACTGA
Upstream 100 bases:
>100_bases GGGCGGCGCCTGCGGGGTGCCGCCCTTGTCCTATCGTCGGCGTGTGCCTATACAGTTTTTGACGAATACAGACGCGGCTG CATCGGCAGGAAAGGCAAGC
Downstream 100 bases:
>100_bases TCGCCCATCGATCACCTGGCGGATGTCTTTCCGCCTGGCGCTGATGGTGCTGACGCTGCTGTTCCTGATCGTCCCGCATC TCCTCTATCGCGCCATCGGG
Product: ferric uptake regulator family protein
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MSGNIDLEALCHEKGLRITEQRRIIARVISESEDHPDVETLYDRASKIDSGISIATVYRTVRLFEEAGILDRHDFGDGRS RYEAAPEAHHDHLIDVETGKVIEFVDPELEALQKVIAERLGFRLVDHRMELYGVAIDRKRD
Sequences:
>Translated_141_residues MSGNIDLEALCHEKGLRITEQRRIIARVISESEDHPDVETLYDRASKIDSGISIATVYRTVRLFEEAGILDRHDFGDGRS RYEAAPEAHHDHLIDVETGKVIEFVDPELEALQKVIAERLGFRLVDHRMELYGVAIDRKRD >Mature_140_residues SGNIDLEALCHEKGLRITEQRRIIARVISESEDHPDVETLYDRASKIDSGISIATVYRTVRLFEEAGILDRHDFGDGRSR YEAAPEAHHDHLIDVETGKVIEFVDPELEALQKVIAERLGFRLVDHRMELYGVAIDRKRD
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=120, Percent_Identity=44.1666666666667, Blast_Score=100, Evalue=3e-23,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 - InterPro: IPR011991 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 16138; Mature: 16007
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGNIDLEALCHEKGLRITEQRRIIARVISESEDHPDVETLYDRASKIDSGISIATVYRT CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH VRLFEEAGILDRHDFGDGRSRYEAAPEAHHDHLIDVETGKVIEFVDPELEALQKVIAERL HHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHH GFRLVDHRMELYGVAIDRKRD HHHHHHHHHHHHHEECCCCCC >Mature Secondary Structure SGNIDLEALCHEKGLRITEQRRIIARVISESEDHPDVETLYDRASKIDSGISIATVYRT CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH VRLFEEAGILDRHDFGDGRSRYEAAPEAHHDHLIDVETGKVIEFVDPELEALQKVIAERL HHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCEEECCCHHHHHHHHHHHHHH GFRLVDHRMELYGVAIDRKRD HHHHHHHHHHHHHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9835040 [H]