| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
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The map label for this gene is 103487511
Identifier: 103487511
GI number: 103487511
Start: 2139974
End: 2141053
Strand: Direct
Name: 103487511
Synonym: Sala_2028
Alternate gene names: NA
Gene position: 2139974-2141053 (Clockwise)
Preceding gene: 103487503
Following gene: 103487515
Centisome position: 63.97
GC content: 68.7
Gene sequence:
>1080_bases ATGAGCGAGCGTATCCAGCCCGCCGGAATCGGCGCCACCGGGAAAGGCGCTGTGCGCGCTGCCTTCGCAAATCAAGTGGC CTATTGCCGCGCCAACGATGCCCCCATCACCGCGCGTATCGTCGCCGCGATCGCCAGCCTGCTGGACGACCCCGCGAGCA ATTTTGCGCGCCGCATCGCCAACTGGCCGGGCGCGCCGCTCGCCGACGCGCTGCCGCTTCGCGCCGCGGGGGGCTTTCAC GCGCTGCACCTGTCGGAGGCTGCGCATGAACTCGCCCCCATTTATGCCGACGCCGAGGACATCAACGACGCCGCGATCGT CGCAGGTGTGGTTGCACGGCATGAAGCCGCGCTGCTCCCCTGGCTCGACGGCCCGCCGCAGACCAACGAGGCGGGGCGCT CGTCAAACTTCATCGCGGCGATGCTGTGGCTCGCCGAACAGGGGTTGCCAGCGCATTTCGACTGCCTTGAAATCGGATCG AGCGCGGGCATCAATCTGATGATCGACCGTTATCATTATGACCTCGGCGGCGTGCATGTCGGGCCGCAGCCCGGCGCGAT GGCCTTCACCCCCGATTGGCGCGGCAACCATCCGCCCATGCACGCAATCGCCATTGCCGGGCTCAGGGGCTGCGACGTTG CGCCGGTCGATCTCACCGACCCGGCGCAGGCGCTCCGCCTCAAAGCCTATATCTGGCCCGAACATGACGTCCGCTTCGCG CGCATGGAAGCGGCGATCGCCGCCGCGTATGTGGAAAAGCCCTGTCTCATCCGCGCCAACGCCGCCGATTTCGTCGAGGC CGAGCTGGCACGGCCACAGGCGGCGGGAACGACGCGCGTGCTGATGCACTCGATCGTCTGGCAATATGTCCCCGCCGAGC AGCAGGCGCGCGTCACCGCCGCCATGGAAGTCGCGGGCGCCCGCGCCACCGCCGACCGCCCCGTCGCATGGATCGCGCTC GAAGCGAACCGGACCGTCCACCATCACGAACTGGTCGTGCGCTACTGGCCGGGCGGCGACGTCCCCCGCAAGCTGGGCCA TGCCCACGCGCACGGCGCGTGGATCGAGTGGCTGGCGTAA
Upstream 100 bases:
>100_bases AGCGGCAGCGCCTCGTCGAGGATGCGTCCCTTGGGGATGGCAAAGATGATCGGTTCGGGCATAAGCGTCGCGCACATAGG CGGCGAAGGGAAAAAGGGCA
Downstream 100 bases:
>100_bases AGGGCCGTCGACAACCGGACTGCCGCTGACACTCCTGCCCGGCGCGACCGCCGATGACGCCGCGCGTCAGGGGCTTTCGG TTTCCGAGGGCGGCACGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MSERIQPAGIGATGKGAVRAAFANQVAYCRANDAPITARIVAAIASLLDDPASNFARRIANWPGAPLADALPLRAAGGFH ALHLSEAAHELAPIYADAEDINDAAIVAGVVARHEAALLPWLDGPPQTNEAGRSSNFIAAMLWLAEQGLPAHFDCLEIGS SAGINLMIDRYHYDLGGVHVGPQPGAMAFTPDWRGNHPPMHAIAIAGLRGCDVAPVDLTDPAQALRLKAYIWPEHDVRFA RMEAAIAAAYVEKPCLIRANAADFVEAELARPQAAGTTRVLMHSIVWQYVPAEQQARVTAAMEVAGARATADRPVAWIAL EANRTVHHHELVVRYWPGGDVPRKLGHAHAHGAWIEWLA
Sequences:
>Translated_359_residues MSERIQPAGIGATGKGAVRAAFANQVAYCRANDAPITARIVAAIASLLDDPASNFARRIANWPGAPLADALPLRAAGGFH ALHLSEAAHELAPIYADAEDINDAAIVAGVVARHEAALLPWLDGPPQTNEAGRSSNFIAAMLWLAEQGLPAHFDCLEIGS SAGINLMIDRYHYDLGGVHVGPQPGAMAFTPDWRGNHPPMHAIAIAGLRGCDVAPVDLTDPAQALRLKAYIWPEHDVRFA RMEAAIAAAYVEKPCLIRANAADFVEAELARPQAAGTTRVLMHSIVWQYVPAEQQARVTAAMEVAGARATADRPVAWIAL EANRTVHHHELVVRYWPGGDVPRKLGHAHAHGAWIEWLA >Mature_358_residues SERIQPAGIGATGKGAVRAAFANQVAYCRANDAPITARIVAAIASLLDDPASNFARRIANWPGAPLADALPLRAAGGFHA LHLSEAAHELAPIYADAEDINDAAIVAGVVARHEAALLPWLDGPPQTNEAGRSSNFIAAMLWLAEQGLPAHFDCLEIGSS AGINLMIDRYHYDLGGVHVGPQPGAMAFTPDWRGNHPPMHAIAIAGLRGCDVAPVDLTDPAQALRLKAYIWPEHDVRFAR MEAAIAAAYVEKPCLIRANAADFVEAELARPQAAGTTRVLMHSIVWQYVPAEQQARVTAAMEVAGARATADRPVAWIALE ANRTVHHHELVVRYWPGGDVPRKLGHAHAHGAWIEWLA
Specific function: Unknown
COG id: COG4427
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38398; Mature: 38267
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERIQPAGIGATGKGAVRAAFANQVAYCRANDAPITARIVAAIASLLDDPASNFARRIA CCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHH NWPGAPLADALPLRAAGGFHALHLSEAAHELAPIYADAEDINDAAIVAGVVARHEAALLP CCCCCCCHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEC WLDGPPQTNEAGRSSNFIAAMLWLAEQGLPAHFDCLEIGSSAGINLMIDRYHYDLGGVHV CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCEEE GPQPGAMAFTPDWRGNHPPMHAIAIAGLRGCDVAPVDLTDPAQALRLKAYIWPEHDVRFA CCCCCCEEECCCCCCCCCCHHHHEEECCCCCCCCCCCCCCCHHHHEEEEEECCCCCCHHH RMEAAIAAAYVEKPCLIRANAADFVEAELARPQAAGTTRVLMHSIVWQYVPAEQQARVTA HHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH AMEVAGARATADRPVAWIALEANRTVHHHELVVRYWPGGDVPRKLGHAHAHGAWIEWLA HHHHHCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCHHHHHCCCCCCCCCCEECC >Mature Secondary Structure SERIQPAGIGATGKGAVRAAFANQVAYCRANDAPITARIVAAIASLLDDPASNFARRIA CCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHH NWPGAPLADALPLRAAGGFHALHLSEAAHELAPIYADAEDINDAAIVAGVVARHEAALLP CCCCCCCHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEC WLDGPPQTNEAGRSSNFIAAMLWLAEQGLPAHFDCLEIGSSAGINLMIDRYHYDLGGVHV CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEEEEECCCCEEE GPQPGAMAFTPDWRGNHPPMHAIAIAGLRGCDVAPVDLTDPAQALRLKAYIWPEHDVRFA CCCCCCEEECCCCCCCCCCHHHHEEECCCCCCCCCCCCCCCHHHHEEEEEECCCCCCHHH RMEAAIAAAYVEKPCLIRANAADFVEAELARPQAAGTTRVLMHSIVWQYVPAEQQARVTA HHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH AMEVAGARATADRPVAWIALEANRTVHHHELVVRYWPGGDVPRKLGHAHAHGAWIEWLA HHHHHCCCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCHHHHHCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA