| Definition | Sphingopyxis alaskensis RB2256, complete genome. |
|---|---|
| Accession | NC_008048 |
| Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103487501
Identifier: 103487501
GI number: 103487501
Start: 2128631
End: 2129152
Strand: Direct
Name: 103487501
Synonym: Sala_2018
Alternate gene names: NA
Gene position: 2128631-2129152 (Clockwise)
Preceding gene: 103487500
Following gene: 103487503
Centisome position: 63.63
GC content: 75.86
Gene sequence:
>522_bases GTGACGCCGCTACCGAACGCGCCCTCGCCGCTCGCTCCCGCCGCGCCGCCGACCATCGCGCCGCCGAGGTCCACGCCGCG CGACACCGCCCCGCGTGCGGCTGCCATCCCGCACGGCCCGGCTCCGCTCCCCCCAGCACGCCGCACACACAGCGCCGCAA CGCTCGACGGCCATTGGGATCGCCGCCTGCGCAAGGGGCTCGTCCGTCCCGACATGAGCATCGACCTGCACGGCCACACG CTCGCTTCGGCGCAGACACAGCTCGACGACGCGATTGGCCGCGCGCTGCACCGCGGCGCGCGCGTGCTGCTCGTCGTCGC CGGGCGTCTCCGCCCCGGTGCTGACCGTCTGCCACAGACGCATGGCGCTCCGCGCCCGCGCGGCGCGATTCGCGCGGCGC TCCCCGACTGGCTCGCCGTCTCGCCCCACGCCGATCGGATTGTCGCGCTGCGCCCCGCGCATATCAGCCACGGCGGCGCG GGCGCGGTCTATGTGATCCTCCGGCGCAGCCGCGAGGATTAG
Upstream 100 bases:
>100_bases CGCGCCAGCATCGCACGCCTGCTTCCCGAAGGCTGACCGGACGATGCCGCGGCGCCTCGCTCCCGAAGAAAGCGCGCTGT GGAAGAAGGTGGCGGCGACG
Downstream 100 bases:
>100_bases AGGAAAACGCGCATTAAGATCCCGCGATAGATTGCGGTCAGCCTGTGCAGGTCCTCGATCGCCACCGCTTCGTCGAGCTT GTGCATCGTTGCGTTGGTCA
Product: Smr protein/MutS2
Products: NA
Alternate protein names: Smr Domain-Containing Protein
Number of amino acids: Translated: 173; Mature: 172
Protein sequence:
>173_residues MTPLPNAPSPLAPAAPPTIAPPRSTPRDTAPRAAAIPHGPAPLPPARRTHSAATLDGHWDRRLRKGLVRPDMSIDLHGHT LASAQTQLDDAIGRALHRGARVLLVVAGRLRPGADRLPQTHGAPRPRGAIRAALPDWLAVSPHADRIVALRPAHISHGGA GAVYVILRRSRED
Sequences:
>Translated_173_residues MTPLPNAPSPLAPAAPPTIAPPRSTPRDTAPRAAAIPHGPAPLPPARRTHSAATLDGHWDRRLRKGLVRPDMSIDLHGHT LASAQTQLDDAIGRALHRGARVLLVVAGRLRPGADRLPQTHGAPRPRGAIRAALPDWLAVSPHADRIVALRPAHISHGGA GAVYVILRRSRED >Mature_172_residues TPLPNAPSPLAPAAPPTIAPPRSTPRDTAPRAAAIPHGPAPLPPARRTHSAATLDGHWDRRLRKGLVRPDMSIDLHGHTL ASAQTQLDDAIGRALHRGARVLLVVAGRLRPGADRLPQTHGAPRPRGAIRAALPDWLAVSPHADRIVALRPAHISHGGAG AVYVILRRSRED
Specific function: Unknown
COG id: COG2840
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18348; Mature: 18217
Theoretical pI: Translated: 12.31; Mature: 12.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLPNAPSPLAPAAPPTIAPPRSTPRDTAPRAAAIPHGPAPLPPARRTHSAATLDGHWD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH RRLRKGLVRPDMSIDLHGHTLASAQTQLDDAIGRALHRGARVLLVVAGRLRPGADRLPQT HHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCC HGAPRPRGAIRAALPDWLAVSPHADRIVALRPAHISHGGAGAVYVILRRSRED CCCCCCCCHHHHHCCCCEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC >Mature Secondary Structure TPLPNAPSPLAPAAPPTIAPPRSTPRDTAPRAAAIPHGPAPLPPARRTHSAATLDGHWD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH RRLRKGLVRPDMSIDLHGHTLASAQTQLDDAIGRALHRGARVLLVVAGRLRPGADRLPQT HHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCC HGAPRPRGAIRAALPDWLAVSPHADRIVALRPAHISHGGAGAVYVILRRSRED CCCCCCCCHHHHHCCCCEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA