Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103486140
Identifier: 103486140
GI number: 103486140
Start: 660260
End: 660550
Strand: Direct
Name: 103486140
Synonym: Sala_0647
Alternate gene names: NA
Gene position: 660260-660550 (Clockwise)
Preceding gene: 103486128
Following gene: 103486141
Centisome position: 19.74
GC content: 65.98
Gene sequence:
>291_bases ATGGTCAAGCCCATGAGCAGCAAAGGCCCCGTACAGCAAGAGATGGAAAGCCTGCTCGCCGCAGCCTTTCCCGACGCCAG TTTCACCGTCAGCAACGACAGCGCCAAACATCACGGCCACGTCGGCGACGACGGCAGCGGCGAATCGCATTTCAGCCTGA GCATCGAATGGGCGGGCTTTGCGGGGATGAACCGCGTGATGCGCCAGCGCATGGTGAACAAGGCGCTCGGCGACCTGCCG GGGCAGCGCGTCCACGCGCTCGCGATCCGCGCGACGGCGCCGGGCGAATAG
Upstream 100 bases:
>100_bases CCATGAAAACGGTTAGGGCGGGGGGAGGAGGGCAAAACGGGCTTTCGGAATCGAAGGGCGGGGAGGGAGGAGGGTCTTAT AATTTGGCAACGCTGCGCTT
Downstream 100 bases:
>100_bases GGAAGCGAATGGCAGAACACCGCATCTATGGGATGAGCTTTGCGAGCGTCTATCCGCATTATGTGACCAAGGCCGAGCGC AAAGGCCGCACCAGGGCGGA
Product: BolA-like protein
Products: NA
Alternate protein names: Transcriptional Regulator BolA; BolA-Like Protein; BolA Family Protein; BolA Protein Truncation; Stress-Induced Morphogen; Bola Family Protein
Number of amino acids: Translated: 96; Mature: 96
Protein sequence:
>96_residues MVKPMSSKGPVQQEMESLLAAAFPDASFTVSNDSAKHHGHVGDDGSGESHFSLSIEWAGFAGMNRVMRQRMVNKALGDLP GQRVHALAIRATAPGE
Sequences:
>Translated_96_residues MVKPMSSKGPVQQEMESLLAAAFPDASFTVSNDSAKHHGHVGDDGSGESHFSLSIEWAGFAGMNRVMRQRMVNKALGDLP GQRVHALAIRATAPGE >Mature_96_residues MVKPMSSKGPVQQEMESLLAAAFPDASFTVSNDSAKHHGHVGDDGSGESHFSLSIEWAGFAGMNRVMRQRMVNKALGDLP GQRVHALAIRATAPGE
Specific function: Unknown
COG id: COG0271
COG function: function code T; Stress-induced morphogen (activity unknown)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10217; Mature: 10217
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKPMSSKGPVQQEMESLLAAAFPDASFTVSNDSAKHHGHVGDDGSGESHFSLSIEWAGF CCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC AGMNRVMRQRMVNKALGDLPGQRVHALAIRATAPGE HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC >Mature Secondary Structure MVKPMSSKGPVQQEMESLLAAAFPDASFTVSNDSAKHHGHVGDDGSGESHFSLSIEWAGF CCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC AGMNRVMRQRMVNKALGDLPGQRVHALAIRATAPGE HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA