Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486112
Identifier: 103486112
GI number: 103486112
Start: 630889
End: 631764
Strand: Direct
Name: 103486112
Synonym: Sala_0619
Alternate gene names: NA
Gene position: 630889-631764 (Clockwise)
Preceding gene: 103486111
Following gene: 103486115
Centisome position: 18.86
GC content: 62.33
Gene sequence:
>876_bases ATGGCAGAAGATAAACAACCCCATCGTTCGCGTTTCCACAAGGCGAAGGACGACGCGCAATTCGCCCAGCAGGCGACCAC CACCCCGCAGACCGCGCACCCCGCATATCGGCTTGCATTCCAGGACAATGATTTCCTGCTGCGCGAAGATTTGCGCCCTG TCCGTTTCCAGCTCGAATTGCTCAAGCCCGAACTCCTGCTCGACGAGGCGGGAATCGAATCGACGCTCGTCGTCTATGGT TCGGCGCGCATTCCCGAACCCGGAGAGGCCGACGCACTCGAGGCCGCGGCGACCGACGATGCGACGCGCAACATCGCCCG CCGCCTGAAGGCCAAGGCCAAATATTATGACGAAGCGCGCGCGCTGGCGCGGCTCGCGAGCCAATATCCGTGCGACGACA AGGGTTGCCGCCACTTCGTTGTCTGTTCGGGCGGCGGGCCGTCGATCATGGAGGCAGCGAACCGCGGCGCCGCCGACGAG GGCCGCGAATCGATCGGGCTCAACATCGTGCTTCCCCATGAACAGGCCCCCAACCGCTTCGTCACCCCGTCGCTGAGTTT CCAGTTCCACTATTTCGCGCTGCGCAAGATGCACTTCCTGCTTCGCGCGCGCGCCGTGTGCGTTTTTCCCGGCGGCTTCG GGACGTTCGACGAGATGTTCGAGCTGCTCACGCTCATCCAGACGGGCAAGATCAAGCCGATCCCGATCGTGCTGTTCGGC AAGGAGTTCTGGCAGCGCGTCGTCAATTTCGAAGCGCTGGTCGAGGAAGGCGTCGTCAGCGCGCGTGACCTCGGCCTCTT CCAGTTCGTCGAGACCGCCGACGAAGCGTGGAAGATCATTCAGGATTTCTACGCGAATATCGAAGAGCAGCATTGA
Upstream 100 bases:
>100_bases GGGCGATTGCCGTGTCGCCTGCGGCTCGTCGCAATGACGGCGATGAGAATGGTGCGCGGCTGACTTGGCAAAGTCATGCG AAGCGTATAGCCGCTCGCTA
Downstream 100 bases:
>100_bases TTTTGAATCCCTCCCCCTGATGGGGGAGGCAGCGAGCCCCGGATCCAGTCCGGGGCGCAGCGGTGGGGCGGGCTATGCCT TACTCGATGGCGCGGGGACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MAEDKQPHRSRFHKAKDDAQFAQQATTTPQTAHPAYRLAFQDNDFLLREDLRPVRFQLELLKPELLLDEAGIESTLVVYG SARIPEPGEADALEAAATDDATRNIARRLKAKAKYYDEARALARLASQYPCDDKGCRHFVVCSGGGPSIMEAANRGAADE GRESIGLNIVLPHEQAPNRFVTPSLSFQFHYFALRKMHFLLRARAVCVFPGGFGTFDEMFELLTLIQTGKIKPIPIVLFG KEFWQRVVNFEALVEEGVVSARDLGLFQFVETADEAWKIIQDFYANIEEQH
Sequences:
>Translated_291_residues MAEDKQPHRSRFHKAKDDAQFAQQATTTPQTAHPAYRLAFQDNDFLLREDLRPVRFQLELLKPELLLDEAGIESTLVVYG SARIPEPGEADALEAAATDDATRNIARRLKAKAKYYDEARALARLASQYPCDDKGCRHFVVCSGGGPSIMEAANRGAADE GRESIGLNIVLPHEQAPNRFVTPSLSFQFHYFALRKMHFLLRARAVCVFPGGFGTFDEMFELLTLIQTGKIKPIPIVLFG KEFWQRVVNFEALVEEGVVSARDLGLFQFVETADEAWKIIQDFYANIEEQH >Mature_290_residues AEDKQPHRSRFHKAKDDAQFAQQATTTPQTAHPAYRLAFQDNDFLLREDLRPVRFQLELLKPELLLDEAGIESTLVVYGS ARIPEPGEADALEAAATDDATRNIARRLKAKAKYYDEARALARLASQYPCDDKGCRHFVVCSGGGPSIMEAANRGAADEG RESIGLNIVLPHEQAPNRFVTPSLSFQFHYFALRKMHFLLRARAVCVFPGGFGTFDEMFELLTLIQTGKIKPIPIVLFGK EFWQRVVNFEALVEEGVVSARDLGLFQFVETADEAWKIIQDFYANIEEQH
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32791; Mature: 32659
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEDKQPHRSRFHKAKDDAQFAQQATTTPQTAHPAYRLAFQDNDFLLREDLRPVRFQLEL CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHCCCHHHHHHHH LKPELLLDEAGIESTLVVYGSARIPEPGEADALEAAATDDATRNIARRLKAKAKYYDEAR HCHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALARLASQYPCDDKGCRHFVVCSGGGPSIMEAANRGAADEGRESIGLNIVLPHEQAPNRF HHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCCHHHCCCEEEECCCCCCCCE VTPSLSFQFHYFALRKMHFLLRARAVCVFPGGFGTFDEMFELLTLIQTGKIKPIPIVLFG ECCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEC KEFWQRVVNFEALVEEGVVSARDLGLFQFVETADEAWKIIQDFYANIEEQH HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AEDKQPHRSRFHKAKDDAQFAQQATTTPQTAHPAYRLAFQDNDFLLREDLRPVRFQLEL CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHCCCHHHHHHHH LKPELLLDEAGIESTLVVYGSARIPEPGEADALEAAATDDATRNIARRLKAKAKYYDEAR HCHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ALARLASQYPCDDKGCRHFVVCSGGGPSIMEAANRGAADEGRESIGLNIVLPHEQAPNRF HHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCCHHHCCCEEEECCCCCCCCE VTPSLSFQFHYFALRKMHFLLRARAVCVFPGGFGTFDEMFELLTLIQTGKIKPIPIVLFG ECCCCCHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEC KEFWQRVVNFEALVEEGVVSARDLGLFQFVETADEAWKIIQDFYANIEEQH HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA