Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486107
Identifier: 103486107
GI number: 103486107
Start: 625278
End: 625709
Strand: Direct
Name: 103486107
Synonym: Sala_0614
Alternate gene names: NA
Gene position: 625278-625709 (Clockwise)
Preceding gene: 103486106
Following gene: 103486111
Centisome position: 18.69
GC content: 67.82
Gene sequence:
>432_bases ATGGACCCGAAGGCGGCGTGCATGACCGACCCCGACGCCCCCTATCACGCCCATGTCTATTATGATCCTGCCGAGAGGTC CGCGGCCGCCGCACTGCGCGACGATTTCGGCCGCAACTCCGCGATCCTGTTCGTCGGCGCGATGGCCGACGGCGCCGCCG GGCCGCATCCGATCGCCCAATATGAGGTGCATTTCCTCGCGCGCTCGCGCGATGCCGTTGTGGCGGCGATTGCGGCGACG GGCCTGCGCGCGCTGGTTCATCCGCTCACCGACGACGATGTGGCCGACCACACCAGCCTGGCGCAATGGATCGGCGAACC GGTCGATCTCGACCTGACCGTGCTCGATCCGCCGGGAGGCAATCAGGGGATCCCGCGTTTCGGGCTTTCGGACTTTCAGG CCTCGACAGGACCGTCGGCCCCCAGCACATAG
Upstream 100 bases:
>100_bases ATCGACCGGCTGCTGCGCGATCCGAAGGTGGCGCGCGATCTGGAAGGCGGCGACGAAGGCGATCAGGGTTGAAGCCTGCC CGAACGGACCTGTCCGGTCG
Downstream 100 bases:
>100_bases GCGCAGCCGAGCCGCGTTGCGTCGTCGGCGTCGGTGAGCGCAGCGACGGTACGCCAGCCGTCGGCGCGCAGGCTCGCCGC GACCGCTGCATCGTGACCGA
Product: aromatic ring-cleaving dioxygenase-like protein
Products: NA
Alternate protein names: Dopa 4 5-Dioxygenase; Aromatic Ring-Cleaving Dioxygenase-Like Protein; DOPA-Dioxygenase-Like Protein
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MDPKAACMTDPDAPYHAHVYYDPAERSAAAALRDDFGRNSAILFVGAMADGAAGPHPIAQYEVHFLARSRDAVVAAIAAT GLRALVHPLTDDDVADHTSLAQWIGEPVDLDLTVLDPPGGNQGIPRFGLSDFQASTGPSAPST
Sequences:
>Translated_143_residues MDPKAACMTDPDAPYHAHVYYDPAERSAAAALRDDFGRNSAILFVGAMADGAAGPHPIAQYEVHFLARSRDAVVAAIAAT GLRALVHPLTDDDVADHTSLAQWIGEPVDLDLTVLDPPGGNQGIPRFGLSDFQASTGPSAPST >Mature_143_residues MDPKAACMTDPDAPYHAHVYYDPAERSAAAALRDDFGRNSAILFVGAMADGAAGPHPIAQYEVHFLARSRDAVVAAIAAT GLRALVHPLTDDDVADHTSLAQWIGEPVDLDLTVLDPPGGNQGIPRFGLSDFQASTGPSAPST
Specific function: Unknown
COG id: COG3805
COG function: function code Q; Aromatic ring-cleaving dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.14.99.-
Molecular weight: Translated: 14949; Mature: 14949
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPKAACMTDPDAPYHAHVYYDPAERSAAAALRDDFGRNSAILFVGAMADGAAGPHPIAQ CCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHH YEVHFLARSRDAVVAAIAATGLRALVHPLTDDDVADHTSLAQWIGEPVDLDLTVLDPPGG EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCC NQGIPRFGLSDFQASTGPSAPST CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDPKAACMTDPDAPYHAHVYYDPAERSAAAALRDDFGRNSAILFVGAMADGAAGPHPIAQ CCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHH YEVHFLARSRDAVVAAIAATGLRALVHPLTDDDVADHTSLAQWIGEPVDLDLTVLDPPGG EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCC NQGIPRFGLSDFQASTGPSAPST CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA