Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486097
Identifier: 103486097
GI number: 103486097
Start: 613866
End: 614639
Strand: Direct
Name: 103486097
Synonym: Sala_0604
Alternate gene names: NA
Gene position: 613866-614639 (Clockwise)
Preceding gene: 103486096
Following gene: 103486098
Centisome position: 18.35
GC content: 65.5
Gene sequence:
>774_bases ATGACCGGCGTGCGCGCCTTGATCCTGTGGCTCGCGCTGACGCTGCTGCCGCTCACGGCGGCTCGCGCGACCGATCCACG GCTGGTCCCCGACGTGTCGAGCCGCGCGATCGACATCCAGTACAGCTTTACCGGCGAGGAACTGCTGCTGTTCGGGGCGA TCCTCTATCCTGATCAGCGGCTGCCCGACGACCGTGCCGACATCGTCGTCGTGCTGAAGGGGCCGGTACGACCGATCGTG CTGCGCGAAAAGCGCCGCGTTGCGGGTATATGGGTCAACGCGAGAAGCATTCGCCTGCGCACCGCGCCCAGCTTTTATGC CATCGGCTCGTCGCGGCCGATCGACAGGCTGGTCGACGAACGCACGGCAGCGATCTTCGAGCTCGGCCTTGCCAATCTGT CGATGTCGCCAACGGGATTTTCGGAGGCGAAAACGCTCGAACGCTTCGAGGCGGGGTTGATCGACCTGTATCGCCGCGCC GGGCTGTTCGTTGAAAATCCCTCGGCGGTCGAGATTACCGAAGGCGTGCTCTATCGCGCGCGCATCCCGGTTCCCGCGCG GGTTCCGGTGGGCACCTATCGCGCCGAAACCTATTTGATCAGTCGCGGCCGCGTGCTCGCGGTCGCTTCGCGTGATGTCC AGATACGCAAGACGGGCTTCGAGCGCTTCGTCGCGCGCGCGGCCGAAGAGCACGGGTTTCTTTACGGCCTGTCGGCGGTG CTGATGTCGCTTGGGCTGGGCTATGCCGCCTCGGCTGTCTTCCGCCGTCGCTGA
Upstream 100 bases:
>100_bases CCGAATATCTGCGCATGGCGCTGGCGGTCATCGTCCTGCTCGTCGCGGCGCGCATGGCGGTCGATCTGTTCATCCGCCCC GATGAAATCTATACCGTGCA
Downstream 100 bases:
>100_bases ACCATATAGAGCACGCCGCTCTAAGCGCTTTGTTTACCCTCCTCTGCGATAGCTGAAAGCGGGACCACAAAGGCGGGGGC AGGATTTATGGACATGCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 257; Mature: 256
Protein sequence:
>257_residues MTGVRALILWLALTLLPLTAARATDPRLVPDVSSRAIDIQYSFTGEELLLFGAILYPDQRLPDDRADIVVVLKGPVRPIV LREKRRVAGIWVNARSIRLRTAPSFYAIGSSRPIDRLVDERTAAIFELGLANLSMSPTGFSEAKTLERFEAGLIDLYRRA GLFVENPSAVEITEGVLYRARIPVPARVPVGTYRAETYLISRGRVLAVASRDVQIRKTGFERFVARAAEEHGFLYGLSAV LMSLGLGYAASAVFRRR
Sequences:
>Translated_257_residues MTGVRALILWLALTLLPLTAARATDPRLVPDVSSRAIDIQYSFTGEELLLFGAILYPDQRLPDDRADIVVVLKGPVRPIV LREKRRVAGIWVNARSIRLRTAPSFYAIGSSRPIDRLVDERTAAIFELGLANLSMSPTGFSEAKTLERFEAGLIDLYRRA GLFVENPSAVEITEGVLYRARIPVPARVPVGTYRAETYLISRGRVLAVASRDVQIRKTGFERFVARAAEEHGFLYGLSAV LMSLGLGYAASAVFRRR >Mature_256_residues TGVRALILWLALTLLPLTAARATDPRLVPDVSSRAIDIQYSFTGEELLLFGAILYPDQRLPDDRADIVVVLKGPVRPIVL REKRRVAGIWVNARSIRLRTAPSFYAIGSSRPIDRLVDERTAAIFELGLANLSMSPTGFSEAKTLERFEAGLIDLYRRAG LFVENPSAVEITEGVLYRARIPVPARVPVGTYRAETYLISRGRVLAVASRDVQIRKTGFERFVARAAEEHGFLYGLSAVL MSLGLGYAASAVFRRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28459; Mature: 28327
Theoretical pI: Translated: 10.63; Mature: 10.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGVRALILWLALTLLPLTAARATDPRLVPDVSSRAIDIQYSFTGEELLLFGAILYPDQR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEHHEECCCCC LPDDRADIVVVLKGPVRPIVLREKRRVAGIWVNARSIRLRTAPSFYAIGSSRPIDRLVDE CCCCCCCEEEEEECCCCEEEEECCCEEEEEEEEEEEEEEEECCCEEECCCCCCHHHHHHH RTAAIFELGLANLSMSPTGFSEAKTLERFEAGLIDLYRRAGLFVENPSAVEITEGVLYRA HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCEEEEE RIPVPARVPVGTYRAETYLISRGRVLAVASRDVQIRKTGFERFVARAAEEHGFLYGLSAV ECCCCCCCCCCCEEEEEEEEECCCEEEEECCCEEEEHHHHHHHHHHHHHHCCHHHHHHHH LMSLGLGYAASAVFRRR HHHHCCCHHHHHHHHCC >Mature Secondary Structure TGVRALILWLALTLLPLTAARATDPRLVPDVSSRAIDIQYSFTGEELLLFGAILYPDQR CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEHHEECCCCC LPDDRADIVVVLKGPVRPIVLREKRRVAGIWVNARSIRLRTAPSFYAIGSSRPIDRLVDE CCCCCCCEEEEEECCCCEEEEECCCEEEEEEEEEEEEEEEECCCEEECCCCCCHHHHHHH RTAAIFELGLANLSMSPTGFSEAKTLERFEAGLIDLYRRAGLFVENPSAVEITEGVLYRA HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCEEEEE RIPVPARVPVGTYRAETYLISRGRVLAVASRDVQIRKTGFERFVARAAEEHGFLYGLSAV ECCCCCCCCCCCEEEEEEEEECCCEEEEECCCEEEEHHHHHHHHHHHHHHCCHHHHHHHH LMSLGLGYAASAVFRRR HHHHCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA