Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486095
Identifier: 103486095
GI number: 103486095
Start: 612046
End: 612852
Strand: Direct
Name: 103486095
Synonym: Sala_0602
Alternate gene names: NA
Gene position: 612046-612852 (Clockwise)
Preceding gene: 103486094
Following gene: 103486096
Centisome position: 18.3
GC content: 73.23
Gene sequence:
>807_bases ATGCCCCATCGCCGCGATGGCGCCGCCGCGGGACCGGCCGTTTCGCTTGTTCCGGCGCCGGGAAGCAATGTGATGACGAC CGGCCGTGACGAACCACGGCGGCCCGTCGCCGCCCGCCACACCGCCGCCGCACAGGCCGAGCCCGTCTGGACGGGACGCC AGATGGCGGGATGGTCGGCGTCGACCTGGCTCTATTTTCGCGACGGATCGGACGAGGCGCCGCGCCGAATCGGCGTATCG AGTTCGCTCGGCGGCAGCCAGGGCGGCGTGCGGCTGGCCTATGGCTTTGGTCCGACGGGGCGGTTGCGCGCCTATGCGCG GGCGACGATGGCTTTCGAGCGGCCGGGCCAGCGCGAGGGGGCTTTCGGCCTGGCCTTCGCGCCGATCGCCGATATGCCGG TCGATGTGGCGATCGAACAGCGCGTCGCCGCCGGGCGCGACGGCCGAACCGCGCTCGCGGCGATGGCCAGCGGCGGGGTT TCCGAGGTCGGGCTTCCGGCGGGCTTCCGGCTGGATGTCTATGGGCAAGCCGGTATTGTCGGCGCGCGCCGCCGCGATGG TTTCGCCGATGGTGCGGTGGTGATCGACCGCGGGCTGGGGCGCGGCGACGCATCCTTGCGTCTCGGCGTGCTGGCCGCAG GCGCGGTGCAGCCCGGCGCGGCGCGGGTCGATGTCGGTCCGCGATTGACGCTGCGCCTGCCCGAAGCAGGGCAGGGCAGT CGGATCGCGCTCGATTGGCGGCAACGCATCGCGGGCGACGCACGGCCCGCAAGCGGCCTTGCACTGACGCTCGCCGCCGA CTTCTGA
Upstream 100 bases:
>100_bases GCCCGCCGGGCGACGACGCGATGCCGCATATACGAAGGTCGGCATTCTTCCGCTGCGCCGGGCGTCCGCCGCGATGGCTC TGGCCGGTCGCGGGACGGGG
Downstream 100 bases:
>100_bases CCGCCTGGAAAAATAGCCACCGCAGCCGATTCCCCGGCGCGAAAAAATGCTCTAGGGTCACCGGACTCGGTGCAGTTTTG CGCTGCGGACGCATGTTTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MPHRRDGAAAGPAVSLVPAPGSNVMTTGRDEPRRPVAARHTAAAQAEPVWTGRQMAGWSASTWLYFRDGSDEAPRRIGVS SSLGGSQGGVRLAYGFGPTGRLRAYARATMAFERPGQREGAFGLAFAPIADMPVDVAIEQRVAAGRDGRTALAAMASGGV SEVGLPAGFRLDVYGQAGIVGARRRDGFADGAVVIDRGLGRGDASLRLGVLAAGAVQPGAARVDVGPRLTLRLPEAGQGS RIALDWRQRIAGDARPASGLALTLAADF
Sequences:
>Translated_268_residues MPHRRDGAAAGPAVSLVPAPGSNVMTTGRDEPRRPVAARHTAAAQAEPVWTGRQMAGWSASTWLYFRDGSDEAPRRIGVS SSLGGSQGGVRLAYGFGPTGRLRAYARATMAFERPGQREGAFGLAFAPIADMPVDVAIEQRVAAGRDGRTALAAMASGGV SEVGLPAGFRLDVYGQAGIVGARRRDGFADGAVVIDRGLGRGDASLRLGVLAAGAVQPGAARVDVGPRLTLRLPEAGQGS RIALDWRQRIAGDARPASGLALTLAADF >Mature_267_residues PHRRDGAAAGPAVSLVPAPGSNVMTTGRDEPRRPVAARHTAAAQAEPVWTGRQMAGWSASTWLYFRDGSDEAPRRIGVSS SLGGSQGGVRLAYGFGPTGRLRAYARATMAFERPGQREGAFGLAFAPIADMPVDVAIEQRVAAGRDGRTALAAMASGGVS EVGLPAGFRLDVYGQAGIVGARRRDGFADGAVVIDRGLGRGDASLRLGVLAAGAVQPGAARVDVGPRLTLRLPEAGQGSR IALDWRQRIAGDARPASGLALTLAADF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27635; Mature: 27503
Theoretical pI: Translated: 11.65; Mature: 11.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHRRDGAAAGPAVSLVPAPGSNVMTTGRDEPRRPVAARHTAAAQAEPVWTGRQMAGWSA CCCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC STWLYFRDGSDEAPRRIGVSSSLGGSQGGVRLAYGFGPTGRLRAYARATMAFERPGQREG EEEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC AFGLAFAPIADMPVDVAIEQRVAAGRDGRTALAAMASGGVSEVGLPAGFRLDVYGQAGIV CEEEEECCCCCCCCCCEEHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCEE GARRRDGFADGAVVIDRGLGRGDASLRLGVLAAGAVQPGAARVDVGPRLTLRLPEAGQGS ECCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCC RIALDWRQRIAGDARPASGLALTLAADF EEEEEHHHHHCCCCCCCCCEEEEEEECC >Mature Secondary Structure PHRRDGAAAGPAVSLVPAPGSNVMTTGRDEPRRPVAARHTAAAQAEPVWTGRQMAGWSA CCCCCCCCCCCEEEEEECCCCCCEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC STWLYFRDGSDEAPRRIGVSSSLGGSQGGVRLAYGFGPTGRLRAYARATMAFERPGQREG EEEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC AFGLAFAPIADMPVDVAIEQRVAAGRDGRTALAAMASGGVSEVGLPAGFRLDVYGQAGIV CEEEEECCCCCCCCCCEEHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCEE GARRRDGFADGAVVIDRGLGRGDASLRLGVLAAGAVQPGAARVDVGPRLTLRLPEAGQGS ECCCCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCC RIALDWRQRIAGDARPASGLALTLAADF EEEEEHHHHHCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA