Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486025
Identifier: 103486025
GI number: 103486025
Start: 546739
End: 548091
Strand: Direct
Name: 103486025
Synonym: Sala_0532
Alternate gene names: NA
Gene position: 546739-548091 (Clockwise)
Preceding gene: 103486022
Following gene: 103486029
Centisome position: 16.34
GC content: 67.85
Gene sequence:
>1353_bases ATGCGCCATTCGCTGACCGCCGCCCTGCTGGCGACCTCGATCCTCTGCCTGCCGTCGACGGCGCGCGCACAGACGATGAC CGCCGAGGAAGCCGCCGCGCTCCGCGCGGAACTCGCGGCGCTGAAGGCACAGGTCGCGACGCTCGAATCGCGTCTCGACG CGGCGACCGGGCAGCCCGCTCCCGCTGCCCAGCCCAAGTCGCCGTCGGTGGCCGCCAAACCCGCGAGCGAGATCGGCTGG AAGGGCGCGCCCGAGATCAGAACCGCCGACGGCTGGAGCTTCAAGCCGCGCGGACGGATGCAGGTCGACCTCGCCGCGGT CGATACACCCGTCGGGGCGACCGACGCGCGTGGCGGGCTGAAAACCGAGTTTCGCCGAATCTATCTGGGCGTCGACGGCA AGATTCCCGGCGGTTTCGCCTATCGCGTCGAGGCCGATGTGGCGAACAATTCGGTGGAGCTTACCGACGTTTACCTGACC TATGGCACCGGGCCCTTGTCGGTTACGGCCGGCCAGATCAAGCCCTTCTGGTCGCTCGACGAAATGACCAGCGACCTTTT CACCAGCTTCATGGAGCGCGCGGCCTTTGCCCAGGCTTTTGGCTTCGAGCGGCGCGTCGGCCTGTCGGCGCAATATAGGA GGGGCGACCTGCTGCTTCAGGCGGGGGTGTTCGGCGACAATGCGGGCGACCTGCTCGACGACAGCAACAATGCGGTCAGC CTCGATGGGCGAGTGGTGTGGATGCCCAAGCTCGGCGACACGCAGCTGCACCTCGCCGCGTCGGGCCACTGGCGCGATCC CAATGATCCCGCCGCGCTCGGGCGCTACCGTGCGCGTCCCTTCGCGCACACGACCGACGTGCGGCTGGTCGATACGGGGC TGATCGACGTCGCGAGCGAACGCGGTATCGGGCTGGAGGGCGCGGTGATCGCCGGGCCGTTCCACGCGGCGGGCGAGGGC TATTGGCACCGCGTCAATCGCACCGGACCGGCCGACCCGACCTTCTTCGGCGGCTATGCCGAGGTCGGGATGGTGCTGAC GCCGGGCGACCGCCGCGGTTACAAGGATGGCGGTTTCGACCGGCTGAAACCCACGAAGCCGATCACTGCCGGCGGCGTCG GCGCGTTCGAAGTGAACGCCCGCTACGATCATCTTGATCTGAACGACGGCGGGATCGTCGGCGGGCGCCAGCAGGCGGCG CTGATCAGCCTCGTCTGGGCGCCGGTCGACTATATTCGCATCAACGCCAACTATGGGAAATTGTGGGTGGGCGATGCACG TGTGGCAACGGCGACGGGGGACCGCGATTATACGGCGGACACCTTCGGCCTTCGGACGCAGGTGGATTTCTGA
Upstream 100 bases:
>100_bases GATGCAACAAAAATGTCATGCAATTGACGCGCAACGGTCACTAATACGCCATAACAGCGCCGCCAGTTTGTAACCCTTTC GTCACGGAGCTTTCCCTTCC
Downstream 100 bases:
>100_bases TGCGGGTTGGCGGGGCTATTTCGCCTTCTTGATGCCTGCTGCCGTTTCGAGTTCGACCAGAGAGTCTTCCAGATAGTCGA TCATCCGCTGCGCGTGCGGG
Product: phosphate-selective porin O and P
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPAPAAQPKSPSVAAKPASEIGW KGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGLKTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLT YGTGPLSVTAGQIKPFWSLDEMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASERGIGLEGAVIAGPFHAAGEG YWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFDRLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAA LISLVWAPVDYIRINANYGKLWVGDARVATATGDRDYTADTFGLRTQVDF
Sequences:
>Translated_450_residues MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPAPAAQPKSPSVAAKPASEIGW KGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGLKTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLT YGTGPLSVTAGQIKPFWSLDEMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASERGIGLEGAVIAGPFHAAGEG YWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFDRLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAA LISLVWAPVDYIRINANYGKLWVGDARVATATGDRDYTADTFGLRTQVDF >Mature_450_residues MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPAPAAQPKSPSVAAKPASEIGW KGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGLKTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLT YGTGPLSVTAGQIKPFWSLDEMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASERGIGLEGAVIAGPFHAAGEG YWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFDRLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAA LISLVWAPVDYIRINANYGKLWVGDARVATATGDRDYTADTFGLRTQVDF
Specific function: Unknown
COG id: COG3746
COG function: function code P; Phosphate-selective porin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010870 [H]
Pfam domain/function: PF07396 Porin_O_P [H]
EC number: NA
Molecular weight: Translated: 48045; Mature: 48045
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPA CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PAAQPKSPSVAAKPASEIGWKGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGL CCCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC KTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLTYGTGPLSVTAGQIKPFWSLD CCEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCEEEECCCCCCCCCHH EMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCEEE LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASE ECCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCEEEECCC RGIGLEGAVIAGPFHAAGEGYWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFD CCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCEECCHHHCCEEECCCCCCCCCCCCCC RLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAALISLVWAPVDYIRINANYGK CCCCCCCCCCCCCCEEEECCEECEEECCCCCEECCCCHHEEEEEEECCEEEEEEECCCCE LWVGDARVATATGDRDYTADTFGLRTQVDF EEECCCEEEEECCCCCCCCCCCCCEEEECC >Mature Secondary Structure MRHSLTAALLATSILCLPSTARAQTMTAEEAAALRAELAALKAQVATLESRLDAATGQPA CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC PAAQPKSPSVAAKPASEIGWKGAPEIRTADGWSFKPRGRMQVDLAAVDTPVGATDARGGL CCCCCCCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC KTEFRRIYLGVDGKIPGGFAYRVEADVANNSVELTDVYLTYGTGPLSVTAGQIKPFWSLD CCEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEEEECCCCEEEECCCCCCCCCHH EMTSDLFTSFMERAAFAQAFGFERRVGLSAQYRRGDLLLQAGVFGDNAGDLLDDSNNAVS HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCEEE LDGRVVWMPKLGDTQLHLAASGHWRDPNDPAALGRYRARPFAHTTDVRLVDTGLIDVASE ECCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCEEEEECCEEEECCC RGIGLEGAVIAGPFHAAGEGYWHRVNRTGPADPTFFGGYAEVGMVLTPGDRRGYKDGGFD CCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCEECCHHHCCEEECCCCCCCCCCCCCC RLKPTKPITAGGVGAFEVNARYDHLDLNDGGIVGGRQQAALISLVWAPVDYIRINANYGK CCCCCCCCCCCCCCEEEECCEECEEECCCCCEECCCCHHEEEEEEECCEEEEEEECCCCE LWVGDARVATATGDRDYTADTFGLRTQVDF EEECCCEEEEECCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647; 1938923 [H]