Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103486020
Identifier: 103486020
GI number: 103486020
Start: 542505
End: 543173
Strand: Direct
Name: 103486020
Synonym: Sala_0527
Alternate gene names: NA
Gene position: 542505-543173 (Clockwise)
Preceding gene: 103486019
Following gene: 103486021
Centisome position: 16.22
GC content: 70.4
Gene sequence:
>669_bases ATGCCGAGTAAACCGACACCGGCCCCCGCCTTCGCGGGGGCGACGGCTGAACCCAGCGCCTACCCCGATATGCGCGATCC GCGCGTCATGGTCGCGGTGCCGCGGGCGCGGCGCGCGGCGATGGCGGCGTTGTGGGGGCTCGCCGCGCGGTTGACCAGAT TGCTGCTCGACGCGCGCGAGCCGCTGATCGGACAGATCAAGCTTGCCTGGTGGCGCGACATGATGGCGATGCTGGCGGCC GATCCTGCTGCACTCCCCAAGGGCGAACCGCTGCTCGCCGACCTCGCGGCGAGCTGGGCCGGGCAGGGCGGGCTCGACGC GCTCGTCGATGCGGCCGAAACGATGCTGCTGGCAGAGGGCGATACCGGGCGACGGGTGGCATCCGTGCGCTTCGGCGCGC ACCTCTTCGCGCTGTCGGGCGGCACGGAGCGCGGCGGTCAACGCTGGGGTCTTGTTTGGGGTGCGGGCGTCGTCGGGGCG GAGGCCGAAGCGCGACAGCTTTTGCAGGACGCCAAAATATCCGGCGTGCCCTCACGCCGCGATTACGCCGGAAAGCGCGC TCTGCTGATGCTCGACCGCTGGGCCGCGGCGATTGCAGCACGCGATGGCGAACGACACTTGCGAAGCGAAGGATTGCTGC TTTTGCGCATCGGGCTGTTCGGCCGCTGA
Upstream 100 bases:
>100_bases TGATCGACACGCCGCGCGTGGTGACGGCGGTGAAGGCGGTTCTCAATCGTTAATCCGTCGCCCCCGCGAAGGCGGGGGCC GTCATCGGCCTTGCCCTTCC
Downstream 100 bases:
>100_bases TCGAATAAATGCCGTCGGGGGTGGAAATACCGCCTGCGAACATCTATCTTGCCCGGTACAGAAATAGGGTCGCAGGGGAC GCTTATGTTCAACGGGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MPSKPTPAPAFAGATAEPSAYPDMRDPRVMVAVPRARRAAMAALWGLAARLTRLLLDAREPLIGQIKLAWWRDMMAMLAA DPAALPKGEPLLADLAASWAGQGGLDALVDAAETMLLAEGDTGRRVASVRFGAHLFALSGGTERGGQRWGLVWGAGVVGA EAEARQLLQDAKISGVPSRRDYAGKRALLMLDRWAAAIAARDGERHLRSEGLLLLRIGLFGR
Sequences:
>Translated_222_residues MPSKPTPAPAFAGATAEPSAYPDMRDPRVMVAVPRARRAAMAALWGLAARLTRLLLDAREPLIGQIKLAWWRDMMAMLAA DPAALPKGEPLLADLAASWAGQGGLDALVDAAETMLLAEGDTGRRVASVRFGAHLFALSGGTERGGQRWGLVWGAGVVGA EAEARQLLQDAKISGVPSRRDYAGKRALLMLDRWAAAIAARDGERHLRSEGLLLLRIGLFGR >Mature_221_residues PSKPTPAPAFAGATAEPSAYPDMRDPRVMVAVPRARRAAMAALWGLAARLTRLLLDAREPLIGQIKLAWWRDMMAMLAAD PAALPKGEPLLADLAASWAGQGGLDALVDAAETMLLAEGDTGRRVASVRFGAHLFALSGGTERGGQRWGLVWGAGVVGAE AEARQLLQDAKISGVPSRRDYAGKRALLMLDRWAAAIAARDGERHLRSEGLLLLRIGLFGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23637; Mature: 23506
Theoretical pI: Translated: 10.88; Mature: 10.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSKPTPAPAFAGATAEPSAYPDMRDPRVMVAVPRARRAAMAALWGLAARLTRLLLDARE CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC PLIGQIKLAWWRDMMAMLAADPAALPKGEPLLADLAASWAGQGGLDALVDAAETMLLAEG CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEECC DTGRRVASVRFGAHLFALSGGTERGGQRWGLVWGAGVVGAEAEARQLLQDAKISGVPSRR CCCCEEEEEEECEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC DYAGKRALLMLDRWAAAIAARDGERHLRSEGLLLLRIGLFGR HHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCC >Mature Secondary Structure PSKPTPAPAFAGATAEPSAYPDMRDPRVMVAVPRARRAAMAALWGLAARLTRLLLDARE CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCC PLIGQIKLAWWRDMMAMLAADPAALPKGEPLLADLAASWAGQGGLDALVDAAETMLLAEG CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHEEEECC DTGRRVASVRFGAHLFALSGGTERGGQRWGLVWGAGVVGAEAEARQLLQDAKISGVPSRR CCCCEEEEEEECEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCC DYAGKRALLMLDRWAAAIAARDGERHLRSEGLLLLRIGLFGR HHCCCHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA