Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is argG
Identifier: 103485988
GI number: 103485988
Start: 512621
End: 513838
Strand: Direct
Name: argG
Synonym: Sala_0495
Alternate gene names: 103485988
Gene position: 512621-513838 (Clockwise)
Preceding gene: 103485985
Following gene: 103485989
Centisome position: 15.32
GC content: 62.89
Gene sequence:
>1218_bases ATGTCCGATTCCATCAAGCGCGTCGTCCTTGCCTATTCGGGTGGTCTCGACACCAGCGTCATCCTGAAATGGCTGCAGGT GACCTATGGCTGCGAGGTCGTGACCTTTACCGCCGATCTGGGGCAGGGCGAGGAGCTGGAACCCGCGCGCGCCAAGGCCG AGCTGATGGGGATCAAGCCCGAACATATCTATATCGACGATTTGCGCGAGGAGTTCGTGCGTGACTTCGTTTTCCCGATG ATGCGCGCCAATGCGCGCTACGAGGGCGATTACCTGCTCGGCACGTCGATCGCGCGGCCGCTGATTTCGAAGCGGCTGGT CGAGATCGCCAGGGAAACGGGCGCCGATGCGGTGGCGCATGGCGCGACGGGCAAGGGCAATGACCAGGTGCGCTTCGAGC TGTCGGCCTATGCGCTCAATCCCGACATCAAGGTGATCGCGCCCTGGCGCGAATGGGATCTGACCAGCCGCACCGCGCTG ATCGCGTGGGCCGAACAGCATCAGATTCCTGTGCCCAAGGACAAGCGCGGCGAAAGCCCGTTCAGCACCGACGCGAACCT CCTCCACACATCGTCCGAAGGCAAGGTGCTCGAGGATCCATGGGAAGAAACCCCCGACTATGTCTATTCGCGCACGGTGA ACCCGGAGGATGCGCCCGATACGCCCGAATATATCACGATCGATTTCGAGCGCGGTGACGGCGTCGCGCTGAACGGGCAG GCGATGTCGCCCGCGACCCTGCTCGCGGCACTCAACGACCTGGGCCGCAAGCATGGCATCGGCCGCCTCGACCTCGTCGA AAACCGCTTCGTCGGCATGAAGTCGCGCGGCATGTACGAAACGCCGGGCGGCGAAATCTATGCGCGGGCGCATCGCGGCA TCGAAAGCATCACGCTCGACCGCGGCGCGGCGCACCTCAAAGATGAACTGATGCCCAAATATGCCGAGCTGATCTATAAC GGATTCTGGTTCGCCCCCGAGCGCGAGATGTTGCAGGCGGCGATCGACCACAGCCAGGCGAATGTCACCGGCACGGTTCG ATTGAAGCTTTACAAGGGCAATGCCAGCGTCGTCGGCCGCAAGTCGCCGTTCAGCCTGTACAGCGAACGCCATGTGACGT TCGAGGATGATGCCGGCGCCTATGACCAGAAGGACGCGGCCGGCTTCATCAGGCTCAACGCGCTGCGGCTCAAACTGCTT GCCCGACAGGGGCGCTGA
Upstream 100 bases:
>100_bases GCGAATATCGCGCGCAGCACCCGGCACGAATGCGCCGGTTGCGTGCGGGGCGCCGCCCTGCTAGCCGCGCCCGCGTCCCT CCCTCGCCAAAGGTGCAGCC
Downstream 100 bases:
>100_bases GGCGCGCGACATGACCGCGACCCGTTTCTTTTCGGACAATGCCGCTGCGGTCCACCCCGCCGTGATGGAGGCGCTCGTCG CCGCCAACCATGTCGATACA
Product: argininosuccinate synthase
Products: NA
Alternate protein names: Citrulline--aspartate ligase
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSDSIKRVVLAYSGGLDTSVILKWLQVTYGCEVVTFTADLGQGEELEPARAKAELMGIKPEHIYIDDLREEFVRDFVFPM MRANARYEGDYLLGTSIARPLISKRLVEIARETGADAVAHGATGKGNDQVRFELSAYALNPDIKVIAPWREWDLTSRTAL IAWAEQHQIPVPKDKRGESPFSTDANLLHTSSEGKVLEDPWEETPDYVYSRTVNPEDAPDTPEYITIDFERGDGVALNGQ AMSPATLLAALNDLGRKHGIGRLDLVENRFVGMKSRGMYETPGGEIYARAHRGIESITLDRGAAHLKDELMPKYAELIYN GFWFAPEREMLQAAIDHSQANVTGTVRLKLYKGNASVVGRKSPFSLYSERHVTFEDDAGAYDQKDAAGFIRLNALRLKLL ARQGR
Sequences:
>Translated_405_residues MSDSIKRVVLAYSGGLDTSVILKWLQVTYGCEVVTFTADLGQGEELEPARAKAELMGIKPEHIYIDDLREEFVRDFVFPM MRANARYEGDYLLGTSIARPLISKRLVEIARETGADAVAHGATGKGNDQVRFELSAYALNPDIKVIAPWREWDLTSRTAL IAWAEQHQIPVPKDKRGESPFSTDANLLHTSSEGKVLEDPWEETPDYVYSRTVNPEDAPDTPEYITIDFERGDGVALNGQ AMSPATLLAALNDLGRKHGIGRLDLVENRFVGMKSRGMYETPGGEIYARAHRGIESITLDRGAAHLKDELMPKYAELIYN GFWFAPEREMLQAAIDHSQANVTGTVRLKLYKGNASVVGRKSPFSLYSERHVTFEDDAGAYDQKDAAGFIRLNALRLKLL ARQGR >Mature_404_residues SDSIKRVVLAYSGGLDTSVILKWLQVTYGCEVVTFTADLGQGEELEPARAKAELMGIKPEHIYIDDLREEFVRDFVFPMM RANARYEGDYLLGTSIARPLISKRLVEIARETGADAVAHGATGKGNDQVRFELSAYALNPDIKVIAPWREWDLTSRTALI AWAEQHQIPVPKDKRGESPFSTDANLLHTSSEGKVLEDPWEETPDYVYSRTVNPEDAPDTPEYITIDFERGDGVALNGQA MSPATLLAALNDLGRKHGIGRLDLVENRFVGMKSRGMYETPGGEIYARAHRGIESITLDRGAAHLKDELMPKYAELIYNG FWFAPEREMLQAAIDHSQANVTGTVRLKLYKGNASVVGRKSPFSLYSERHVTFEDDAGAYDQKDAAGFIRLNALRLKLLA RQGR
Specific function: Arginine biosynthesis; seventh step. [C]
COG id: COG0137
COG function: function code E; Argininosuccinate synthase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the argininosuccinate synthase family. Type 1 subfamily
Homologues:
Organism=Homo sapiens, GI53759107, Length=404, Percent_Identity=47.029702970297, Blast_Score=360, Evalue=1e-99, Organism=Homo sapiens, GI16950633, Length=404, Percent_Identity=47.029702970297, Blast_Score=360, Evalue=1e-99, Organism=Escherichia coli, GI1789563, Length=419, Percent_Identity=28.6396181384248, Blast_Score=135, Evalue=3e-33, Organism=Saccharomyces cerevisiae, GI6324514, Length=406, Percent_Identity=43.5960591133005, Blast_Score=327, Evalue=2e-90, Organism=Drosophila melanogaster, GI21358151, Length=404, Percent_Identity=45.7920792079208, Blast_Score=333, Evalue=1e-91,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): ASSY_SPHAL (Q1GVV6)
Other databases:
- EMBL: CP000356 - RefSeq: YP_615549.1 - ProteinModelPortal: Q1GVV6 - GeneID: 4081385 - GenomeReviews: CP000356_GR - KEGG: sal:Sala_0495 - NMPDR: fig|317655.9.peg.453 - HOGENOM: HBG335267 - OMA: PLIAKRQ - ProtClustDB: PRK00509 - BioCyc: SALA317655:SALA_0495-MONOMER - BRENDA: 6.3.4.5 - GO: GO:0005737 - HAMAP: MF_00005 - InterPro: IPR001518 - InterPro: IPR018223 - InterPro: IPR014729 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR11587 - TIGRFAMs: TIGR00032
Pfam domain/function: PF00764 Arginosuc_synth
EC number: =6.3.4.5
Molecular weight: Translated: 45138; Mature: 45006
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS00564 ARGININOSUCCIN_SYN_1; PS00565 ARGININOSUCCIN_SYN_2
Important sites: BINDING 38-38 BINDING 91-91 BINDING 96-96 BINDING 121-121 BINDING 123-123 BINDING 127-127 BINDING 127-127 BINDING 128-128 BINDING 131-131 BINDING 182-182 BINDING 191-191 BINDING 267-267 BINDING 279-279
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSIKRVVLAYSGGLDTSVILKWLQVTYGCEVVTFTADLGQGEELEPARAKAELMGIKP CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCC EHIYIDDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLVEIARETGADAVAH CEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEC GATGKGNDQVRFELSAYALNPDIKVIAPWREWDLTSRTALIAWAEQHQIPVPKDKRGESP CCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCEEEEEEHHCCCCCCCCCCCCCCC FSTDANLLHTSSEGKVLEDPWEETPDYVYSRTVNPEDAPDTPEYITIDFERGDGVALNGQ CCCCCCEEEECCCCCEECCCHHCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCEEECCC AMSPATLLAALNDLGRKHGIGRLDLVENRFVGMKSRGMYETPGGEIYARAHRGIESITLD CCCHHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCCCCCEECCCCCEEEHHHCCCCEEEEC RGAAHLKDELMPKYAELIYNGFWFAPEREMLQAAIDHSQANVTGTVRLKLYKGNASVVGR CCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEC KSPFSLYSERHVTFEDDAGAYDQKDAAGFIRLNALRLKLLARQGR CCCCHHHCCCCEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHCCC >Mature Secondary Structure SDSIKRVVLAYSGGLDTSVILKWLQVTYGCEVVTFTADLGQGEELEPARAKAELMGIKP CCCCEEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCC EHIYIDDLREEFVRDFVFPMMRANARYEGDYLLGTSIARPLISKRLVEIARETGADAVAH CEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEC GATGKGNDQVRFELSAYALNPDIKVIAPWREWDLTSRTALIAWAEQHQIPVPKDKRGESP CCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCCCEEEEEEHHCCCCCCCCCCCCCCC FSTDANLLHTSSEGKVLEDPWEETPDYVYSRTVNPEDAPDTPEYITIDFERGDGVALNGQ CCCCCCEEEECCCCCEECCCHHCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCEEECCC AMSPATLLAALNDLGRKHGIGRLDLVENRFVGMKSRGMYETPGGEIYARAHRGIESITLD CCCHHHHHHHHHHHHHHCCCCCEEEHHCCCCCCCCCCCEECCCCCEEEHHHCCCCEEEEC RGAAHLKDELMPKYAELIYNGFWFAPEREMLQAAIDHSQANVTGTVRLKLYKGNASVVGR CCHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEEEC KSPFSLYSERHVTFEDDAGAYDQKDAAGFIRLNALRLKLLARQGR CCCCHHHCCCCEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA