Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485902
Identifier: 103485902
GI number: 103485902
Start: 418721
End: 419134
Strand: Direct
Name: 103485902
Synonym: Sala_0408
Alternate gene names: NA
Gene position: 418721-419134 (Clockwise)
Preceding gene: 103485894
Following gene: 103485903
Centisome position: 12.52
GC content: 54.11
Gene sequence:
>414_bases ATGCGGCTCTCGCGAGTTTACGAACGGAGGCGCAGTCAGCGATTTCACCCGTTCGAAACTTTGATGGAGGTGGTGATGGA GCAAATTGCCAAAAACGAGTGGGCAGAATTGTGCGATCGCATTAGCAAGCGGTTGCTTGGCCTGCGCGCCGAAATCGAGG TCCAATCGCTGGATTTGGGCGATCAGATCGAGGCCGAATTTCTTCCAATCCTAGGTATCACCTATGATCACAAAGACGAT GTCGTGGTCATCGCCCTTGAGGGGCTTGCTCACCTGATCCCGCACCCGGTCGATATCCAGACCAAAGGCTACGACGATAA TATCGAGGCAGTCCTTATTGTGGACAAGGAAGGTGTGCGGCATCTCACATCATTCCGGGAGCCGCTTAAGTTGCCACCCC CGCCTGCTGAGTAA
Upstream 100 bases:
>100_bases CCTTGACATAAATAAATAGGCGGGCCGATCTGCTTCCTATGGTACGCTCGTATCGCCAGATGACTGTCGAGTCGGCGAGG ATAGCGGAAACGGCATTGAA
Downstream 100 bases:
>100_bases GCTTCACTTCTATAAGCCAACTTGTAGGCCAACCATCAAAGAGAGAGTTCAGCCATGACATTCAGAAATCTTGCCCATGG CGTTGCCGCCATCGCATTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 137
Protein sequence:
>137_residues MRLSRVYERRRSQRFHPFETLMEVVMEQIAKNEWAELCDRISKRLLGLRAEIEVQSLDLGDQIEAEFLPILGITYDHKDD VVVIALEGLAHLIPHPVDIQTKGYDDNIEAVLIVDKEGVRHLTSFREPLKLPPPPAE
Sequences:
>Translated_137_residues MRLSRVYERRRSQRFHPFETLMEVVMEQIAKNEWAELCDRISKRLLGLRAEIEVQSLDLGDQIEAEFLPILGITYDHKDD VVVIALEGLAHLIPHPVDIQTKGYDDNIEAVLIVDKEGVRHLTSFREPLKLPPPPAE >Mature_137_residues MRLSRVYERRRSQRFHPFETLMEVVMEQIAKNEWAELCDRISKRLLGLRAEIEVQSLDLGDQIEAEFLPILGITYDHKDD VVVIALEGLAHLIPHPVDIQTKGYDDNIEAVLIVDKEGVRHLTSFREPLKLPPPPAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15792; Mature: 15792
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSRVYERRRSQRFHPFETLMEVVMEQIAKNEWAELCDRISKRLLGLRAEIEVQSLDLG CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEEEECCCC DQIEAEFLPILGITYDHKDDVVVIALEGLAHLIPHPVDIQTKGYDDNIEAVLIVDKEGVR CCCCHHHHHEEEEEECCCCCEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCCHHH HLTSFREPLKLPPPPAE HHHHHHCCCCCCCCCCC >Mature Secondary Structure MRLSRVYERRRSQRFHPFETLMEVVMEQIAKNEWAELCDRISKRLLGLRAEIEVQSLDLG CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEEEECCCC DQIEAEFLPILGITYDHKDDVVVIALEGLAHLIPHPVDIQTKGYDDNIEAVLIVDKEGVR CCCCHHHHHEEEEEECCCCCEEEEEECHHHHHCCCCCCEEECCCCCCCCEEEEECCCHHH HLTSFREPLKLPPPPAE HHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]