Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is kefBC [H]
Identifier: 103485882
GI number: 103485882
Start: 399785
End: 401482
Strand: Direct
Name: kefBC [H]
Synonym: Sala_0387
Alternate gene names: 103485882
Gene position: 399785-401482 (Clockwise)
Preceding gene: 103485881
Following gene: 103485887
Centisome position: 11.95
GC content: 56.54
Gene sequence:
>1698_bases ATGGAAGAACTCTTTTTCTCTGTGTTCATTCTCTTTGCTTCCATCCTGGTGGCCGGCTTGCTGTTTCATCTCATGAAGGC TCCAACGATCCTGGGCTATATTGCTGTCGGTATTCTTCTGGGGTCCTCAGTCACCGGATTGTTTCCCGATGGTCCGGCGC TGGACTTCATGGCCGAGGCAGGCATTATCCTCCTGCTGTTCATGGTAGGCTTGGAATTTTCGCTTACCGAATTCTGGAGC GACAAGGGCAAAATACTGAAGGCTGGCGCGCTGCAGGGGTTTCTTGTCGGGCTGCCCGTGGGAAGCCTCGTTTGGTGCCT GGGGTGGGGAATCGCGCCCGCGATCTTGCTGGGCGCATCGGTCGCAATGTCCTCGACCGCATTGTCGGCAAAGCAGTTGG CAGACCACGGGGAATTGACCACCCGGCACGGGCGTGTGGCCATTTCGGTGCTGGTCTTTCAAGACTTGGCGGCCATTCCA CTACTTGCCATGCTCGCGATCTGGCAATCTGGCGGACAGCCCGGTCCGGTCGAGATATCGCTCGAAATCCTCAAGGTCCT GGCAATCTTCGCAGTCGCGCTGGTTTTGGCGAGGCCTGTACTCCGCAGCCTGCTGATGGCAATCTATCGGCGCGGCAATT CCGAGCTGCTGGTCCTTGCCGCTCTCGCGATTATTGCCATGGCAGCGCAATCCGCCCATCTCGCCGGAGCTTCCGCTGCT CTGGGTGCATTTCTGGCGGGACTTATTTTGGGTGAAAGCGATGTCCGGCACCGGATCGAGGAAGACTTGCGGCCTTTTCG GGACGTTTTCGCCAGTATTTTCTTCGTCTCGATCGGCTTGCAGCTGGACCTGAGCCAGCTTGGGAGCAGTCCGCTTGCGG TCCTTGCCTGGCTATTGGTTCTCCTTCCTGCAAAAGCATTGCTGAATTTTATCGCACTGAAGATATCCGGATCCTCTGCG CGTGATGCGCTGCAGACGGCTGTAATTCTGGCTCATGGTGGGGAATTCGGACTTTTGCTCCTTTCCGGAGCTCTTACCGC TTCGCTGATATCGACCGAAATGGGCCAGCCACTGCTGCTGGCGCTTGTCGTTTCGATGGGTCTTGGGCCAATTCTTTTCC GATCTTCGGAAACCATCGCGCGGAACCTCTGCGGCGGGAAATCCGGAATGACCAATCTACCGCAAAGGGAGGAGGTGGAA GTCGCTCGCGAAGTCAGGGCTTGCATCAATCACATCGTTTTCTGCGGCGCGGACAACCTTGCGCGATCAGCGGCGAGAGC GGTGAGACTGGCAGAACTCGACTTTGTGATGATCGAACCAGATTTGAGACTTTATTTGACCGCGCGCGAAGAAGGGCTGC CAGTCATTCTCGGCGACCCGGGTCGCACCGCTACGCTCGAGGCGGCGCGCGCAAACGTCGCGGCGGCAATCGTGATAACG AAACCGTTTTCGCAAAGGCAAAACCGGATTGTGGACTGGTTTCTCGAAGGCAACGCTCACGGGAAAATCGTCTTGCTCGG CACATCTCAGGATAGGGATGAGACGATGCACACCGACCAACGGATCCTGCAGTTAGACCCGGAGCTATATCTGGGAATGG ATTTGGCACGTCTGGTACTGTCGGCTGTCGATCTTCCTAAAAATGAGATCGAGAAAATTTCCTGCACCTTGACTTCCGAT GCTGCAGACCATGCTTGA
Upstream 100 bases:
>100_bases GAGGCCGACCGACCTGTCTGACATGCCGTATTTCGTGAAACTGCGAAATGGCTTTGCGCGGCTGTTTTCGCCGATCCTTT GAAACTGGCGGAAAGCGATA
Downstream 100 bases:
>100_bases TGTCTGCCCTGCGCACGAATTTACAATGAGCGGCAAGGCCTTATCTGTCGTGTCAGTCGTCGGCTAGCCATGGATCGGGC TGTACGTTTGCAAGCGGGAG
Product: sodium/hydrogen exchanger
Products: Proton [Cytoplasm]; K (I) [Periplasm] [C]
Alternate protein names: K(+)/H(+) antiporter [H]
Number of amino acids: Translated: 565; Mature: 565
Protein sequence:
>565_residues MEELFFSVFILFASILVAGLLFHLMKAPTILGYIAVGILLGSSVTGLFPDGPALDFMAEAGIILLLFMVGLEFSLTEFWS DKGKILKAGALQGFLVGLPVGSLVWCLGWGIAPAILLGASVAMSSTALSAKQLADHGELTTRHGRVAISVLVFQDLAAIP LLAMLAIWQSGGQPGPVEISLEILKVLAIFAVALVLARPVLRSLLMAIYRRGNSELLVLAALAIIAMAAQSAHLAGASAA LGAFLAGLILGESDVRHRIEEDLRPFRDVFASIFFVSIGLQLDLSQLGSSPLAVLAWLLVLLPAKALLNFIALKISGSSA RDALQTAVILAHGGEFGLLLLSGALTASLISTEMGQPLLLALVVSMGLGPILFRSSETIARNLCGGKSGMTNLPQREEVE VAREVRACINHIVFCGADNLARSAARAVRLAELDFVMIEPDLRLYLTAREEGLPVILGDPGRTATLEAARANVAAAIVIT KPFSQRQNRIVDWFLEGNAHGKIVLLGTSQDRDETMHTDQRILQLDPELYLGMDLARLVLSAVDLPKNEIEKISCTLTSD AADHA
Sequences:
>Translated_565_residues MEELFFSVFILFASILVAGLLFHLMKAPTILGYIAVGILLGSSVTGLFPDGPALDFMAEAGIILLLFMVGLEFSLTEFWS DKGKILKAGALQGFLVGLPVGSLVWCLGWGIAPAILLGASVAMSSTALSAKQLADHGELTTRHGRVAISVLVFQDLAAIP LLAMLAIWQSGGQPGPVEISLEILKVLAIFAVALVLARPVLRSLLMAIYRRGNSELLVLAALAIIAMAAQSAHLAGASAA LGAFLAGLILGESDVRHRIEEDLRPFRDVFASIFFVSIGLQLDLSQLGSSPLAVLAWLLVLLPAKALLNFIALKISGSSA RDALQTAVILAHGGEFGLLLLSGALTASLISTEMGQPLLLALVVSMGLGPILFRSSETIARNLCGGKSGMTNLPQREEVE VAREVRACINHIVFCGADNLARSAARAVRLAELDFVMIEPDLRLYLTAREEGLPVILGDPGRTATLEAARANVAAAIVIT KPFSQRQNRIVDWFLEGNAHGKIVLLGTSQDRDETMHTDQRILQLDPELYLGMDLARLVLSAVDLPKNEIEKISCTLTSD AADHA >Mature_565_residues MEELFFSVFILFASILVAGLLFHLMKAPTILGYIAVGILLGSSVTGLFPDGPALDFMAEAGIILLLFMVGLEFSLTEFWS DKGKILKAGALQGFLVGLPVGSLVWCLGWGIAPAILLGASVAMSSTALSAKQLADHGELTTRHGRVAISVLVFQDLAAIP LLAMLAIWQSGGQPGPVEISLEILKVLAIFAVALVLARPVLRSLLMAIYRRGNSELLVLAALAIIAMAAQSAHLAGASAA LGAFLAGLILGESDVRHRIEEDLRPFRDVFASIFFVSIGLQLDLSQLGSSPLAVLAWLLVLLPAKALLNFIALKISGSSA RDALQTAVILAHGGEFGLLLLSGALTASLISTEMGQPLLLALVVSMGLGPILFRSSETIARNLCGGKSGMTNLPQREEVE VAREVRACINHIVFCGADNLARSAARAVRLAELDFVMIEPDLRLYLTAREEGLPVILGDPGRTATLEAARANVAAAIVIT KPFSQRQNRIVDWFLEGNAHGKIVLLGTSQDRDETMHTDQRILQLDPELYLGMDLARLVLSAVDLPKNEIEKISCTLTSD AADHA
Specific function: Transport system that facilitate potassium-efflux, possibly by potassium-proton antiport [H]
COG id: COG0475
COG function: function code P; Kef-type K+ transport systems, membrane components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI157388921, Length=380, Percent_Identity=29.4736842105263, Blast_Score=92, Evalue=1e-18, Organism=Escherichia coli, GI1786232, Length=496, Percent_Identity=28.4274193548387, Blast_Score=175, Evalue=7e-45, Organism=Escherichia coli, GI1786685, Length=516, Percent_Identity=28.6821705426357, Blast_Score=164, Evalue=2e-41, Organism=Escherichia coli, GI1789749, Length=452, Percent_Identity=28.5398230088496, Blast_Score=149, Evalue=5e-37, Organism=Saccharomyces cerevisiae, GI6322367, Length=393, Percent_Identity=24.1730279898219, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR004771 - InterPro: IPR016040 - InterPro: IPR003148 [H]
Pfam domain/function: PF00999 Na_H_Exchanger; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 60080; Mature: 60080
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEELFFSVFILFASILVAGLLFHLMKAPTILGYIAVGILLGSSVTGLFPDGPALDFMAEA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH GIILLLFMVGLEFSLTEFWSDKGKILKAGALQGFLVGLPVGSLVWCLGWGIAPAILLGAS HHHHHHHHHCCCHHHHHHHCCCCCEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH VAMSSTALSAKQLADHGELTTRHGRVAISVLVFQDLAAIPLLAMLAIWQSGGQPGPVEIS HHHHHHHHHHHHHHCCCCCEECCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEH LEILKVLAIFAVALVLARPVLRSLLMAIYRRGNSELLVLAALAIIAMAAQSAHLAGASAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH LGAFLAGLILGESDVRHRIEEDLRPFRDVFASIFFVSIGLQLDLSQLGSSPLAVLAWLLV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHH LLPAKALLNFIALKISGSSARDALQTAVILAHGGEFGLLLLSGALTASLISTEMGQPLLL HHHHHHHHHHHEEEECCCCHHHHHHHHEEEEECCCEEHHHHHHHHHHHHHHHHCCCHHHH ALVVSMGLGPILFRSSETIARNLCGGKSGMTNLPQREEVEVAREVRACINHIVFCGADNL HHHHHHCCCCEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCHH ARSAARAVRLAELDFVMIEPDLRLYLTAREEGLPVILGDPGRTATLEAARANVAAAIVIT HHHHHHHHHHEECCEEEECCCEEEEEEECCCCCEEEECCCCCCEEHHHHHCCEEEEEEEE KPFSQRQNRIVDWFLEGNAHGKIVLLGTSQDRDETMHTDQRILQLDPELYLGMDLARLVL CCHHHHCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH SAVDLPKNEIEKISCTLTSDAADHA HHHCCCHHHHHEEEEEEECCCCCCC >Mature Secondary Structure MEELFFSVFILFASILVAGLLFHLMKAPTILGYIAVGILLGSSVTGLFPDGPALDFMAEA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH GIILLLFMVGLEFSLTEFWSDKGKILKAGALQGFLVGLPVGSLVWCLGWGIAPAILLGAS HHHHHHHHHCCCHHHHHHHCCCCCEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH VAMSSTALSAKQLADHGELTTRHGRVAISVLVFQDLAAIPLLAMLAIWQSGGQPGPVEIS HHHHHHHHHHHHHHCCCCCEECCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEH LEILKVLAIFAVALVLARPVLRSLLMAIYRRGNSELLVLAALAIIAMAAQSAHLAGASAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH LGAFLAGLILGESDVRHRIEEDLRPFRDVFASIFFVSIGLQLDLSQLGSSPLAVLAWLLV HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCHHHHHHHHHH LLPAKALLNFIALKISGSSARDALQTAVILAHGGEFGLLLLSGALTASLISTEMGQPLLL HHHHHHHHHHHEEEECCCCHHHHHHHHEEEEECCCEEHHHHHHHHHHHHHHHHCCCHHHH ALVVSMGLGPILFRSSETIARNLCGGKSGMTNLPQREEVEVAREVRACINHIVFCGADNL HHHHHHCCCCEEECCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCHH ARSAARAVRLAELDFVMIEPDLRLYLTAREEGLPVILGDPGRTATLEAARANVAAAIVIT HHHHHHHHHHEECCEEEECCCEEEEEEECCCCCEEEECCCCCCEEHHHHHCCEEEEEEEE KPFSQRQNRIVDWFLEGNAHGKIVLLGTSQDRDETMHTDQRILQLDPELYLGMDLARLVL CCHHHHCCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH SAVDLPKNEIEKISCTLTSDAADHA HHHCCCHHHHHEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; K (I) [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + K (I) [Cytoplasm] = Proton [Cytoplasm] + K (I) [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]