Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485840
Identifier: 103485840
GI number: 103485840
Start: 349119
End: 351053
Strand: Direct
Name: 103485840
Synonym: Sala_0345
Alternate gene names: NA
Gene position: 349119-351053 (Clockwise)
Preceding gene: 103485839
Following gene: 103485841
Centisome position: 10.44
GC content: 67.44
Gene sequence:
>1935_bases ATGAGCTTCATCCTGCGCCGCATCGCGACGACCAAGACGGGCAAGCAGATCGTCCGCGATCAGCCGCTGCCGGGCGACAC GATCACGCTGGGTCGCGACAGCGCGAACGGGATTCACGTCGCCGATCTGGCGGTAAATCCGCACCATGCGACGATCGCCA GCAGCGATGGGCGCACGGTGCGGGTGACGGCGCAGGAGGGGCTGGGGTTCGACCTCAACGGCCGCACCGAAACCGTCGCC GACATCGACAGCGCGGCGGGGGGTGAGCTTCGCTTCGGCGGCCACCGGCTGACGATCGCGCGCGAGGACGGCAGGATCAT CCTCCTCGTCGAGCGCATCGACGAATTGTCGCAATCGTCGAAGGATGTCGACGAGGTAAAGGCCTTTTCGCTCGCGGGCG TGATGCCGGGCAAGCGGGTCGGGGCGTGGACCTTTGGCCTGCTGATGCTGCTGGCGTTCCTCGTGGGGCCGATCTGGGCA TGGCACAGCTATCGCCAGGTCGACGAGCGGCCCGACGGCTTCCACGCCGACCGTACCTGGCTGTCGGGTCCGCTGTCGAG CGCGCACGCCAATCTGACCAAGGATTGCCAGTCGTGCCACGTCGAGCCGTTCGTCGCGGTGACCGACAGTGCGTGCGTGA ACTGTCACACGGGTGAGCACAAGGCGATGAGCATGGCGCACGCCGGTGCGCCGACCGCGATGCTGCTCGCGGCGCGCGCC CCGCCGGGCGGGTTCGACAAGTTCCTCGCCAATGTCGGCGAGGCATTCAACCGGCCGCAGGGACGCTGCGTCGATTGCCA TACCGAGCATGAGGGCGCCGGGCCGATGGCGGCGACGCCGCAGCAATTCTGCGCCGATTGCCACGACGGGATGCAGGGCC GGCTCAAAAGTGCGGGGCATCCGACGATGCTGGCCGATGCCAGCGATTTCGGCACGGGCCACCCCGAGTTCCGCCCACTC GTCCGCGCCGTGCCGGGCGGTAAACTGGAGCGTATGATGCTGGCGAAGGGCGTCGTCGACGACAACGGCCTGAAGTTCCC GCACGACCTGCACCTGCGGGCGAATGGCGGGGTCGCGCGTATGGCGGCGAGTTTTCGGGGCCGTCATGATTTCGGGCGGA AGCTGGAATGCGAGAATTGCCACCGGGTCGAGGCCGATGGTGTGCGCGTCAAGCCCGTCGAGATGGAGCGCGACTGCGCG ATGTGTCACAGCCTGGCGTTCGAGACCGTCGGCGGGGTGACGCGGACGCTGCGCCACGGCGAGCCGACGCAGGTCATCGC CGACCTGACCGCCTATTACCGCTCGACCCCGCCGTCGCGACCGCTTCAACTGGGCGGAATGCAGCGGCGGCGGCCGGGAG CCTATGCCGAGGGGCAGGTTTACAACATCTATTTCAACGAGGTGGCGGTGCGGCCGGCCCGCGCGCAGGATGCCGTGCGC GCAATCTTTTCCAAGGGCGGCGCCTGTTACGACTGCCACACCATCTTCGCCCCACGGGCGGGCAGCAGCTGGCGCGTCGC GGCGGTGAACCAGACGCAGCGTTACCTGCAAAAGGGCTGGTTCGACCATGACGCGCACAAGGAAACCGCGTGCGCCGATT GCCATACCGCAGCGCCCGCGTCGAAAGCGTCGACCGACCTGCTCGTGCCGGGCCTTCGCCAGTGCCGCGACTGTCATGTC GGCGAAGGTGGGGCGCGGCTGGTGAAGGTCGAAACCGCGACCGAATCGCCCTGCGCCATGTGCCATGAATATCATTCGGA CGGCGGCAAACCGTGGGCGCCGAAGCGTCAGCAGAGAGTTAACAGCGTGGCAATCACAAATAAACGCGCCGGTGCCAGTG TGAGTGTGACCGCGATCACAGGTGCCGCCGCGCGTGGTCTTTATCATGTGACGTGGCGCACACCGGCCTTGCACGGGGCA AGGCGGGGCGGGTGA
Upstream 100 bases:
>100_bases GAAATCTGGCTCTATGTGCATGTGCCGCTGACCTTTGCGCTGATCGCGGCGCTGTCGGCGCATATCGTCAGCGTCTTTTT CTATTGGTGAGGCGGGGACG
Downstream 100 bases:
>100_bases ACTATCGGGCCGGGACCAGCCGGTGACAGCAGGGGACGGATATGCTGATCGCCCAGATCACCGATATCCACATCGGGTTC GATCCGGACAATCCGGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: Forkhead-Associated Protein
Number of amino acids: Translated: 644; Mature: 643
Protein sequence:
>644_residues MSFILRRIATTKTGKQIVRDQPLPGDTITLGRDSANGIHVADLAVNPHHATIASSDGRTVRVTAQEGLGFDLNGRTETVA DIDSAAGGELRFGGHRLTIAREDGRIILLVERIDELSQSSKDVDEVKAFSLAGVMPGKRVGAWTFGLLMLLAFLVGPIWA WHSYRQVDERPDGFHADRTWLSGPLSSAHANLTKDCQSCHVEPFVAVTDSACVNCHTGEHKAMSMAHAGAPTAMLLAARA PPGGFDKFLANVGEAFNRPQGRCVDCHTEHEGAGPMAATPQQFCADCHDGMQGRLKSAGHPTMLADASDFGTGHPEFRPL VRAVPGGKLERMMLAKGVVDDNGLKFPHDLHLRANGGVARMAASFRGRHDFGRKLECENCHRVEADGVRVKPVEMERDCA MCHSLAFETVGGVTRTLRHGEPTQVIADLTAYYRSTPPSRPLQLGGMQRRRPGAYAEGQVYNIYFNEVAVRPARAQDAVR AIFSKGGACYDCHTIFAPRAGSSWRVAAVNQTQRYLQKGWFDHDAHKETACADCHTAAPASKASTDLLVPGLRQCRDCHV GEGGARLVKVETATESPCAMCHEYHSDGGKPWAPKRQQRVNSVAITNKRAGASVSVTAITGAAARGLYHVTWRTPALHGA RRGG
Sequences:
>Translated_644_residues MSFILRRIATTKTGKQIVRDQPLPGDTITLGRDSANGIHVADLAVNPHHATIASSDGRTVRVTAQEGLGFDLNGRTETVA DIDSAAGGELRFGGHRLTIAREDGRIILLVERIDELSQSSKDVDEVKAFSLAGVMPGKRVGAWTFGLLMLLAFLVGPIWA WHSYRQVDERPDGFHADRTWLSGPLSSAHANLTKDCQSCHVEPFVAVTDSACVNCHTGEHKAMSMAHAGAPTAMLLAARA PPGGFDKFLANVGEAFNRPQGRCVDCHTEHEGAGPMAATPQQFCADCHDGMQGRLKSAGHPTMLADASDFGTGHPEFRPL VRAVPGGKLERMMLAKGVVDDNGLKFPHDLHLRANGGVARMAASFRGRHDFGRKLECENCHRVEADGVRVKPVEMERDCA MCHSLAFETVGGVTRTLRHGEPTQVIADLTAYYRSTPPSRPLQLGGMQRRRPGAYAEGQVYNIYFNEVAVRPARAQDAVR AIFSKGGACYDCHTIFAPRAGSSWRVAAVNQTQRYLQKGWFDHDAHKETACADCHTAAPASKASTDLLVPGLRQCRDCHV GEGGARLVKVETATESPCAMCHEYHSDGGKPWAPKRQQRVNSVAITNKRAGASVSVTAITGAAARGLYHVTWRTPALHGA RRGG >Mature_643_residues SFILRRIATTKTGKQIVRDQPLPGDTITLGRDSANGIHVADLAVNPHHATIASSDGRTVRVTAQEGLGFDLNGRTETVAD IDSAAGGELRFGGHRLTIAREDGRIILLVERIDELSQSSKDVDEVKAFSLAGVMPGKRVGAWTFGLLMLLAFLVGPIWAW HSYRQVDERPDGFHADRTWLSGPLSSAHANLTKDCQSCHVEPFVAVTDSACVNCHTGEHKAMSMAHAGAPTAMLLAARAP PGGFDKFLANVGEAFNRPQGRCVDCHTEHEGAGPMAATPQQFCADCHDGMQGRLKSAGHPTMLADASDFGTGHPEFRPLV RAVPGGKLERMMLAKGVVDDNGLKFPHDLHLRANGGVARMAASFRGRHDFGRKLECENCHRVEADGVRVKPVEMERDCAM CHSLAFETVGGVTRTLRHGEPTQVIADLTAYYRSTPPSRPLQLGGMQRRRPGAYAEGQVYNIYFNEVAVRPARAQDAVRA IFSKGGACYDCHTIFAPRAGSSWRVAAVNQTQRYLQKGWFDHDAHKETACADCHTAAPASKASTDLLVPGLRQCRDCHVG EGGARLVKVETATESPCAMCHEYHSDGGKPWAPKRQQRVNSVAITNKRAGASVSVTAITGAAARGLYHVTWRTPALHGAR RGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69541; Mature: 69410
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFILRRIATTKTGKQIVRDQPLPGDTITLGRDSANGIHVADLAVNPHHATIASSDGRTV CHHHHHHHHHCHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEECCCCCEE RVTAQEGLGFDLNGRTETVADIDSAAGGELRFGGHRLTIAREDGRIILLVERIDELSQSS EEEECCCCCCCCCCCCCHHHHHHCCCCCCEEECCEEEEEEECCCCEEEEHHHHHHHHHCC KDVDEVKAFSLAGVMPGKRVGAWTFGLLMLLAFLVGPIWAWHSYRQVDERPDGFHADRTW CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LSGPLSSAHANLTKDCQSCHVEPFVAVTDSACVNCHTGEHKAMSMAHAGAPTAMLLAARA HCCCCCHHHCHHHHHHHHCCCCCEEEECCCCEEECCCCCHHHHHHHHCCCCCEEEEEECC PPGGFDKFLANVGEAFNRPQGRCVDCHTEHEGAGPMAATPQQFCADCHDGMQGRLKSAGH CCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCC PTMLADASDFGTGHPEFRPLVRAVPGGKLERMMLAKGVVDDNGLKFPHDLHLRANGGVAR CEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHH MAASFRGRHDFGRKLECENCHRVEADGVRVKPVEMERDCAMCHSLAFETVGGVTRTLRHG HHHHHCCCCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC EPTQVIADLTAYYRSTPPSRPLQLGGMQRRRPGAYAEGQVYNIYFNEVAVRPARAQDAVR CHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCEEECCHHHHHHHH AIFSKGGACYDCHTIFAPRAGSSWRVAAVNQTQRYLQKGWFDHDAHKETACADCHTAAPA HHHHCCCCEEEEEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC SKASTDLLVPGLRQCRDCHVGEGGARLVKVETATESPCAMCHEYHSDGGKPWAPKRQQRV CCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHH NSVAITNKRAGASVSVTAITGAAARGLYHVTWRTPALHGARRGG HHEEEECCCCCCEEEEEEECCHHHCCEEEEEECCCCCCCCCCCC >Mature Secondary Structure SFILRRIATTKTGKQIVRDQPLPGDTITLGRDSANGIHVADLAVNPHHATIASSDGRTV HHHHHHHHHCHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCCCEEEECCCCCEE RVTAQEGLGFDLNGRTETVADIDSAAGGELRFGGHRLTIAREDGRIILLVERIDELSQSS EEEECCCCCCCCCCCCCHHHHHHCCCCCCEEECCEEEEEEECCCCEEEEHHHHHHHHHCC KDVDEVKAFSLAGVMPGKRVGAWTFGLLMLLAFLVGPIWAWHSYRQVDERPDGFHADRTW CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH LSGPLSSAHANLTKDCQSCHVEPFVAVTDSACVNCHTGEHKAMSMAHAGAPTAMLLAARA HCCCCCHHHCHHHHHHHHCCCCCEEEECCCCEEECCCCCHHHHHHHHCCCCCEEEEEECC PPGGFDKFLANVGEAFNRPQGRCVDCHTEHEGAGPMAATPQQFCADCHDGMQGRLKSAGH CCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHCCCC PTMLADASDFGTGHPEFRPLVRAVPGGKLERMMLAKGVVDDNGLKFPHDLHLRANGGVAR CEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHH MAASFRGRHDFGRKLECENCHRVEADGVRVKPVEMERDCAMCHSLAFETVGGVTRTLRHG HHHHHCCCCCCCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC EPTQVIADLTAYYRSTPPSRPLQLGGMQRRRPGAYAEGQVYNIYFNEVAVRPARAQDAVR CHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCEEECCHHHHHHHH AIFSKGGACYDCHTIFAPRAGSSWRVAAVNQTQRYLQKGWFDHDAHKETACADCHTAAPA HHHHCCCCEEEEEEEECCCCCCCEEEEECHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC SKASTDLLVPGLRQCRDCHVGEGGARLVKVETATESPCAMCHEYHSDGGKPWAPKRQQRV CCCCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHH NSVAITNKRAGASVSVTAITGAAARGLYHVTWRTPALHGARRGG HHEEEECCCCCCEEEEEEECCHHHCCEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA