Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is xcpT [H]
Identifier: 103485813
GI number: 103485813
Start: 327040
End: 327531
Strand: Direct
Name: xcpT [H]
Synonym: Sala_0318
Alternate gene names: 103485813
Gene position: 327040-327531 (Clockwise)
Preceding gene: 103485812
Following gene: 103485814
Centisome position: 9.78
GC content: 63.62
Gene sequence:
>492_bases ATGTCGCTGATGCAGCTTTTTCTCCGCCTGATGCTCGATACCGGACGTCCGCCGGTTCATCGTCGCCGTAAAAAGGGCGA GCGCGGCTTTACGCTGACCGAGTTGATGGTCGTCATCTTCATCATCGGCCTGCTCGCGACGGTGGTGATGATCAACGTCC TGCCCAGCCAGGACCGCGCGATGGTGACCAAGGCGAAGGCCGATATTGCGACGCTCGAAACCGCGCTCGAACAATATCGG CTCGACAATCTGACCTATCCGACGTCGACCGACGGGCTGAATGCGCTTGTCACCGCGCCGCCCGCGCTCGCGCAGCCCGA ACGCTATCGCCGCGGCGGCTATATCAGGAAGCTGCCCGAAGACCCGTGGGGCCGCCCCTATAATTATCAGGCGCCCGGCC CGAACGGCAAGGCGTTCGACGTCTGGTCGCTTGGCGCCGACGGCGCCCCCGGCGGGACCGACGAAAATGCGGATATTCGC GGCGACAGCTAA
Upstream 100 bases:
>100_bases ACCTGTCATAATTGTCGTTATGGGGTCATGTGTTGCCCTTATCATCCTCGCCATTCTGCTGCCGATCCTTCAGTTGCAGA ATCTAGCCGGACTGTAATAA
Downstream 100 bases:
>100_bases ACTCCGCGCGCGCGCGCGTCCCGACGCCAACGGATTCACGCTGGTCGAACTGATGGTCGTGCTGGCGATTATGGCGCTCG CGGCGACCGCGGTGGTGCTG
Product: general secretion pathway protein G
Products: NA
Alternate protein names: PilD-dependent protein pddA [H]
Number of amino acids: Translated: 163; Mature: 162
Protein sequence:
>163_residues MSLMQLFLRLMLDTGRPPVHRRRKKGERGFTLTELMVVIFIIGLLATVVMINVLPSQDRAMVTKAKADIATLETALEQYR LDNLTYPTSTDGLNALVTAPPALAQPERYRRGGYIRKLPEDPWGRPYNYQAPGPNGKAFDVWSLGADGAPGGTDENADIR GDS
Sequences:
>Translated_163_residues MSLMQLFLRLMLDTGRPPVHRRRKKGERGFTLTELMVVIFIIGLLATVVMINVLPSQDRAMVTKAKADIATLETALEQYR LDNLTYPTSTDGLNALVTAPPALAQPERYRRGGYIRKLPEDPWGRPYNYQAPGPNGKAFDVWSLGADGAPGGTDENADIR GDS >Mature_162_residues SLMQLFLRLMLDTGRPPVHRRRKKGERGFTLTELMVVIFIIGLLATVVMINVLPSQDRAMVTKAKADIATLETALEQYRL DNLTYPTSTDGLNALVTAPPALAQPERYRRGGYIRKLPEDPWGRPYNYQAPGPNGKAFDVWSLGADGAPGGTDENADIRG DS
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane [H]
COG id: COG2165
COG function: function code NU; Type II secretory pathway, pseudopilin PulG
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP G family [H]
Homologues:
Organism=Escherichia coli, GI1789725, Length=134, Percent_Identity=46.2686567164179, Blast_Score=100, Evalue=5e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000983 - InterPro: IPR012902 - InterPro: IPR001120 - InterPro: IPR013545 - InterPro: IPR010054 [H]
Pfam domain/function: PF08334 GSPII_G; PF07963 N_methyl [H]
EC number: NA
Molecular weight: Translated: 18001; Mature: 17870
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLMQLFLRLMLDTGRPPVHRRRKKGERGFTLTELMVVIFIIGLLATVVMINVLPSQDRA CHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH MVTKAKADIATLETALEQYRLDNLTYPTSTDGLNALVTAPPALAQPERYRRGGYIRKLPE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCC DPWGRPYNYQAPGPNGKAFDVWSLGADGAPGGTDENADIRGDS CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SLMQLFLRLMLDTGRPPVHRRRKKGERGFTLTELMVVIFIIGLLATVVMINVLPSQDRA HHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH MVTKAKADIATLETALEQYRLDNLTYPTSTDGLNALVTAPPALAQPERYRRGGYIRKLPE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCC DPWGRPYNYQAPGPNGKAFDVWSLGADGAPGGTDENADIRGDS CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1588814; 1309616; 10984043 [H]