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The map label for this gene is sigC [H]

Identifier: 103485781

GI number: 103485781

Start: 283576

End: 284211

Strand: Direct

Name: sigC [H]

Synonym: Sala_0286

Alternate gene names: 103485781

Gene position: 283576-284211 (Clockwise)

Preceding gene: 103485780

Following gene: 103485783

Centisome position: 8.48

GC content: 64.15

Gene sequence:

>636_bases
TTGCCAGACAAAGGCCTTGTTATCAGCACCGTAACGCCCCAACCGCTCGACGACGCCAGCTTCAAGCAGGAACTGGCGGC
GATGCTGCCGCACCTGCGCGCCTTTGGCCGCAGCCTGTGCGGCAACGCCGACCTGGCCGACGATCTGGTGCAGGAAACGA
TGCTGAAGGCGTGGAAGGCGCGCGCGCAATATGTGCCGGGGCCGTCGAGCATGAAAAGCTGGGCCTTCGTCATCCTTCGC
AACTGTTTCCTGTCGCAGATGCGGCGCAAGAAGTTCACCGCCGAATATGATGAACTCGCCGCCGAACGCCTGCTCGTCGC
TCCCGACGATCAGGACGACAGCCTGCACCTCGCCGATGTCCAGCGCGCGTTGCTCATGCTGCCCGTCGACCAGCGTGAGG
CGCTGATCCTGATCGGCGCGGGACAGCTTAGCTACGAGGAAGCCGCGGCGATCTGCGGCTGCGCGATCGGCACGATGAAA
AGCCGCGTCTCGCGCGGGCGCGCGGCCTTGCAAACGATATTGGAAAGCGGCGAGATGCCGCGGCGAAGCACCGATGAACA
GCCGTCGCACGAAGCCTTCCGCGCGATCATGGACCATGTCGATGAACTGACCGGCGGCGCGTCGACCCCTGATTAA

Upstream 100 bases:

>100_bases
TTCGTCGCGCTCGGTCGGCGATCGCCGTCGGCAGGCGGTCAGGCGCCCTTGCAATGACGCGCCAGCGCGCTAAGCCGGTC
GTGCGCCCGCGAGGACCGGG

Downstream 100 bases:

>100_bases
AGCACTGTCTATGCCGCGAGCTGCGGCGTGAAGAGCAGGCTCTGGCTGATCGCCGCGCGCACCGTATTTTCGCGGAATGG
CTTGGAGATGAGGAAGGTCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MPDKGLVISTVTPQPLDDASFKQELAAMLPHLRAFGRSLCGNADLADDLVQETMLKAWKARAQYVPGPSSMKSWAFVILR
NCFLSQMRRKKFTAEYDELAAERLLVAPDDQDDSLHLADVQRALLMLPVDQREALILIGAGQLSYEEAAAICGCAIGTMK
SRVSRGRAALQTILESGEMPRRSTDEQPSHEAFRAIMDHVDELTGGASTPD

Sequences:

>Translated_211_residues
MPDKGLVISTVTPQPLDDASFKQELAAMLPHLRAFGRSLCGNADLADDLVQETMLKAWKARAQYVPGPSSMKSWAFVILR
NCFLSQMRRKKFTAEYDELAAERLLVAPDDQDDSLHLADVQRALLMLPVDQREALILIGAGQLSYEEAAAICGCAIGTMK
SRVSRGRAALQTILESGEMPRRSTDEQPSHEAFRAIMDHVDELTGGASTPD
>Mature_210_residues
PDKGLVISTVTPQPLDDASFKQELAAMLPHLRAFGRSLCGNADLADDLVQETMLKAWKARAQYVPGPSSMKSWAFVILRN
CFLSQMRRKKFTAEYDELAAERLLVAPDDQDDSLHLADVQRALLMLPVDQREALILIGAGQLSYEEAAAICGCAIGTMKS
RVSRGRAALQTILESGEMPRRSTDEQPSHEAFRAIMDHVDELTGGASTPD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23160; Mature: 23029

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKGLVISTVTPQPLDDASFKQELAAMLPHLRAFGRSLCGNADLADDLVQETMLKAWKA
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RAQYVPGPSSMKSWAFVILRNCFLSQMRRKKFTAEYDELAAERLLVAPDDQDDSLHLADV
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCCCCCCCHHHHH
QRALLMLPVDQREALILIGAGQLSYEEAAAICGCAIGTMKSRVSRGRAALQTILESGEMP
HHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RRSTDEQPSHEAFRAIMDHVDELTGGASTPD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PDKGLVISTVTPQPLDDASFKQELAAMLPHLRAFGRSLCGNADLADDLVQETMLKAWKA
CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RAQYVPGPSSMKSWAFVILRNCFLSQMRRKKFTAEYDELAAERLLVAPDDQDDSLHLADV
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCCCCCCCHHHHH
QRALLMLPVDQREALILIGAGQLSYEEAAAICGCAIGTMKSRVSRGRAALQTILESGEMP
HHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RRSTDEQPSHEAFRAIMDHVDELTGGASTPD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]