Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485762
Identifier: 103485762
GI number: 103485762
Start: 267452
End: 268006
Strand: Direct
Name: 103485762
Synonym: Sala_0267
Alternate gene names: NA
Gene position: 267452-268006 (Clockwise)
Preceding gene: 103485760
Following gene: 103485763
Centisome position: 8.0
GC content: 66.13
Gene sequence:
>555_bases ATGGCCGACGAGTTCGCGAAGATGGGGGAGAGCCTGCGCGCCAAAACGGGCAAGGGGCTCGACGAATGGGTTGCCACCGC GCGCAGGGCCGGGATCGCCGGCCATATGGCGCTGGTGAACCACCTCAAATCCGAACATGGGCTGGGCCACGGCTATGCCA ATATGATCGTCCATGCCGCCAATGCCTCGTCGTCGCTGTCGCAGGACGACGACGCGCTGGTGCAAGCGGCATTCGACGGA GCGAAAGCGCATTGGCGGCCGCTCTACGACCGGTTCGCAGCGCTGGTGCAGGGCTTCGGCAACGACGTCGAGCTGGCGCC GAAGAAGGGCTATGTCAGCTTTCGCCGCAAGAAGCAGTTTGCGCTGCTGATGCCCTCGACCAAGGACCGTTTCGACATCG GCCTGGCGCTCAAGGGCGAGGCGCCGACCGGAAAGCTGGAGCTGGCGGGGAGCTGGAATGCCATGGTCTCGCACCGCATC CGCATCAACGCGGGCGAGGAGCCGGGCGACGATGTGACCGGCTGGCTCCGTGCCGCCTATGACCGTGCGGGCTGA
Upstream 100 bases:
>100_bases CATGCGCGCCCATATCGGGGCGTTCGGCGGCCTTGCCAAGCCTCTTGACAAGTTCCTTGGTTGAATGTTCAATCAACATC GCTATCGGCGGGAGGACATC
Downstream 100 bases:
>100_bases AGGGGGTCACGATGAACGCCGCCGACACGCGCCAGCGCATCCTGATGACCGCGATGGAGCTGTTCTGGGAGAAGGGGTAT CTCTCGACCTCGGTGTCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MADEFAKMGESLRAKTGKGLDEWVATARRAGIAGHMALVNHLKSEHGLGHGYANMIVHAANASSSLSQDDDALVQAAFDG AKAHWRPLYDRFAALVQGFGNDVELAPKKGYVSFRRKKQFALLMPSTKDRFDIGLALKGEAPTGKLELAGSWNAMVSHRI RINAGEEPGDDVTGWLRAAYDRAG
Sequences:
>Translated_184_residues MADEFAKMGESLRAKTGKGLDEWVATARRAGIAGHMALVNHLKSEHGLGHGYANMIVHAANASSSLSQDDDALVQAAFDG AKAHWRPLYDRFAALVQGFGNDVELAPKKGYVSFRRKKQFALLMPSTKDRFDIGLALKGEAPTGKLELAGSWNAMVSHRI RINAGEEPGDDVTGWLRAAYDRAG >Mature_183_residues ADEFAKMGESLRAKTGKGLDEWVATARRAGIAGHMALVNHLKSEHGLGHGYANMIVHAANASSSLSQDDDALVQAAFDGA KAHWRPLYDRFAALVQGFGNDVELAPKKGYVSFRRKKQFALLMPSTKDRFDIGLALKGEAPTGKLELAGSWNAMVSHRIR INAGEEPGDDVTGWLRAAYDRAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19907; Mature: 19776
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADEFAKMGESLRAKTGKGLDEWVATARRAGIAGHMALVNHLKSEHGLGHGYANMIVHAA CCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHEEECC NASSSLSQDDDALVQAAFDGAKAHWRPLYDRFAALVQGFGNDVELAPKKGYVSFRRKKQF CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCE ALLMPSTKDRFDIGLALKGEAPTGKLELAGSWNAMVSHRIRINAGEEPGDDVTGWLRAAY EEECCCCCCCEEEEEEEECCCCCCEEEECCCCHHHEEEEEEEECCCCCCCHHHHHHHHHH DRAG HCCC >Mature Secondary Structure ADEFAKMGESLRAKTGKGLDEWVATARRAGIAGHMALVNHLKSEHGLGHGYANMIVHAA CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHEEECC NASSSLSQDDDALVQAAFDGAKAHWRPLYDRFAALVQGFGNDVELAPKKGYVSFRRKKQF CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHCCCE ALLMPSTKDRFDIGLALKGEAPTGKLELAGSWNAMVSHRIRINAGEEPGDDVTGWLRAAY EEECCCCCCCEEEEEEEECCCCCCEEEECCCCHHHEEEEEEEECCCCCCCHHHHHHHHHH DRAG HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA