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The map label for this gene is xerC [H]

Identifier: 103485754

GI number: 103485754

Start: 260564

End: 261457

Strand: Direct

Name: xerC [H]

Synonym: Sala_0259

Alternate gene names: 103485754

Gene position: 260564-261457 (Clockwise)

Preceding gene: 103485753

Following gene: 103485759

Centisome position: 7.79

GC content: 70.36

Gene sequence:

>894_bases
TTGGCTTCAGATTTGATCCGCGACTGGGATGCCCATCTGGCGCACGAAAAGCGCCGGTCGGAGCATACGCGCCGCGCCTA
TATCGCGACGGCGGAGCGTTTCTGCGCATTCCTGTCGCTGCACCGCGGCGGCGCGGTCGATGCGGCGATGCTGACGGCGC
TGACCCCCAACGACCTGCGCGCATATCTCGCCGACCGCCGCGCCGAGGGGCTGGGCAATGCGTCGGCGGCGCGCGAGCTT
TCGGCGCTGCGCGCCTTCCTGCGCTTTGTCGGCGGATCGAACGCCAGCGTCCCGCAGATGCGCGGACCGCGCGTCAAAAA
GGGGTTGCCGCGTCCCGTTTCGCCCGCCGAGGCGATGCAGTTGGCGCAGAATGTCGAGGACAATGCGCGCGAGGGCTGGG
TCGGCGCGCGCGATTTCGCGCTGCTGCTGCTGCTCTATGGCGCGGGCCTGCGCATCGGGGAGGCGCTGGCGCTCACCGGT
GCGGCGATGCCGCTCGGTGACACGCTGCGCGTCACGGGCAAGCGGAACAAGACGCGGATCGTCCCGATCCTGCCCGCGGT
GGCGAAGGCGGTGGCGCGTTATGTCGCCGCGTGCCCCTGGCCGATCGCCAGGGAAACGCCGCTGTTTCTCGGCGTGCGCG
GCGGGCCGCTCCATCCCGGCGTGGTGCGCGTGAGCGTCCGGTCGGCGCGGCGCGCGCTGGGGTTGTCCGATCGGACGACG
CCGCACGCGCTGCGCCACAGTTTCGCGACGCATTTGCTGGCGGGCGGCGCCGACCTGCGATCCTTGCAGGAACTGCTCGG
CCATGCGAGCCTCGCATCGACGCAGATCTATACTGCGGTCGATGCCGCGCATCTGCTCGACATTTACCGGAGCGCGCATC
CACGGGCGGGGTAA

Upstream 100 bases:

>100_bases
TCTCCCCGCACCGTTCGTTCCGAGCGAGGTCGAGGGACGCGCGGCATGGCGCCAACATGTCTCGACTTCGCTCGACACGA
ACGGAATTAAAGGGCGGTTT

Downstream 100 bases:

>100_bases
ACGTCGAATAGCGGTCCGGGGGCGTGAAGCGGCCGTTTCCCCGCTTTGCGATTCGCGTCCTTACCGCACGCGCGGCCGTT
CAATCCTCGCGCACCTTCGG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MASDLIRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAYLADRRAEGLGNASAAREL
SALRAFLRFVGGSNASVPQMRGPRVKKGLPRPVSPAEAMQLAQNVEDNAREGWVGARDFALLLLLYGAGLRIGEALALTG
AAMPLGDTLRVTGKRNKTRIVPILPAVAKAVARYVAACPWPIARETPLFLGVRGGPLHPGVVRVSVRSARRALGLSDRTT
PHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHPRAG

Sequences:

>Translated_297_residues
MASDLIRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAYLADRRAEGLGNASAAREL
SALRAFLRFVGGSNASVPQMRGPRVKKGLPRPVSPAEAMQLAQNVEDNAREGWVGARDFALLLLLYGAGLRIGEALALTG
AAMPLGDTLRVTGKRNKTRIVPILPAVAKAVARYVAACPWPIARETPLFLGVRGGPLHPGVVRVSVRSARRALGLSDRTT
PHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHPRAG
>Mature_296_residues
ASDLIRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLRAYLADRRAEGLGNASAARELS
ALRAFLRFVGGSNASVPQMRGPRVKKGLPRPVSPAEAMQLAQNVEDNAREGWVGARDFALLLLLYGAGLRIGEALALTGA
AMPLGDTLRVTGKRNKTRIVPILPAVAKAVARYVAACPWPIARETPLFLGVRGGPLHPGVVRVSVRSARRALGLSDRTTP
HALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHPRAG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=251, Percent_Identity=33.8645418326693, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1790768, Length=157, Percent_Identity=34.3949044585987, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31908; Mature: 31777

Theoretical pI: Translated: 11.40; Mature: 11.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDLIRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
AYLADRRAEGLGNASAARELSALRAFLRFVGGSNASVPQMRGPRVKKGLPRPVSPAEAMQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
LAQNVEDNAREGWVGARDFALLLLLYGAGLRIGEALALTGAAMPLGDTLRVTGKRNKTRI
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCEE
VPILPAVAKAVARYVAACPWPIARETPLFLGVRGGPLHPGVVRVSVRSARRALGLSDRTT
EEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHCCCCCCC
PHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHPRAG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASDLIRDWDAHLAHEKRRSEHTRRAYIATAERFCAFLSLHRGGAVDAAMLTALTPNDLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
AYLADRRAEGLGNASAARELSALRAFLRFVGGSNASVPQMRGPRVKKGLPRPVSPAEAMQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
LAQNVEDNAREGWVGARDFALLLLLYGAGLRIGEALALTGAAMPLGDTLRVTGKRNKTRI
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCEE
VPILPAVAKAVARYVAACPWPIARETPLFLGVRGGPLHPGVVRVSVRSARRALGLSDRTT
EEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEHHHHHHHHCCCCCCC
PHALRHSFATHLLAGGADLRSLQELLGHASLASTQIYTAVDAAHLLDIYRSAHPRAG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]