Definition | Sphingopyxis alaskensis RB2256, complete genome. |
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Accession | NC_008048 |
Length | 3,345,170 |
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The map label for this gene is 103485713
Identifier: 103485713
GI number: 103485713
Start: 226308
End: 227210
Strand: Direct
Name: 103485713
Synonym: Sala_0217
Alternate gene names: NA
Gene position: 226308-227210 (Clockwise)
Preceding gene: 103485711
Following gene: 103485714
Centisome position: 6.77
GC content: 64.01
Gene sequence:
>903_bases ATGGTCGAGAGTGGGGCACCGGCGCTCAATCGCAGCCGCGAAACGCGCGCCAATACGCAAAGCGGCTATTGGATGCTGTT CATCTGGCTGGTGCTGCTCGGCATCGCCGTCTGGGCGGCGATCACCAATGCCAACGCCGACGTGGTGATGGCATGGAAAT GGATCGTCGCGGCCACCGCCGCGGTCGTCGGCACGCTCATCCTTTGCGGCTTTTATCTCATCAACCCCAATGAAGCCGCG GCGATCCAGCTGTTCGGCGCATATAAGGGCACCGACCGGCAGGAAGGGCTGCGCTGGGTGCTCCCCTGGCTGACGCGCAA GAAGATCGCGGTGCGCGCGAACAACGTCATTTCGGACAAGATCAAGGTCAACGACCTGCGCGGCAACCCGATCGAGATGG CGGCGCAGGTCGTGTGGCGCGTCACCGACACCGCGCAGGCGCTGTTCGACGTCGACGATTACAAGGAGTTCGTCATGGCG CAGATCGAGGCGGCGGTGCGCTCGATCGGCTCGCGCTACCCCTATGACGATATCGAACATCAGGAAGTCACGTTGCGTGG CAACCATGAAGAGGTCGGCGCCGAGCTGCGCAAGGCACTGATCGAGCGGTTGACCGTCGCGGGCATCACCGTCGACGAAT GCGGCCTCACCCACCTCGCTTATGCGCCCGAGATCGCGGGGGCGATGCTCCGCCGCCAACAGGCCGAAGCGGTGATCGCC GCGCGCAAGAAGCTGGTCGAGGGCGCGGTGACGATGGTCGAAATGGCACTCCAGCACCTGTCGGACAAAAAGGTCGTCGA CCTCGACGACGAGCGCAAGGCGGCGATGGTGTCGAACCTGATGGTCGTGCTGTGCGGCGAACGCGATACGCAGCCGGTCG TCAACGCCGGCTCGCTTTACTGA
Upstream 100 bases:
>100_bases CCTTGCCCGTTCGCGAGCAAAGGGCATCGCCGAATCGGCTTGACTGATGCTCGTTTCGATATAAATATGATATCATCTTT ATATCGACTCGGAGGGATTT
Downstream 100 bases:
>100_bases GGCGCGCCGGACGCGAACGATGACCGGTTCTGCCAAAAAGGCCTTTGCCCTTCGCCTTGATCCCGCGCTGTTCGCCGCGG TCGAGCGGATGGCCGCGGCC
Product: band 7 protein
Products: NA
Alternate protein names: Integral Membrane Protein; SPFH Domain/Band 7 Family Protein; SPFH Domain-Containing Protein/Band 7 Family Protein; Somatin-Like Protein; Band 7 Family Protein; SPFH Domain / Band 7 Family Protein; SPFH Domain-Containing Protein; Integral Membrane Protease Subunit; SPFH/Band 7 Domain-Containing Protein; Transmembrane Protein; HFLK Protein; Membrane Protease Family Stomatin/Prohibitin-Like Protein; Membrane Protease Subunits Stomatin/Prohibitin Homologs; Band 7 Family Membrane Protein; Membrane Protease Subunit Stomatin/Prohibitin
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MVESGAPALNRSRETRANTQSGYWMLFIWLVLLGIAVWAAITNANADVVMAWKWIVAATAAVVGTLILCGFYLINPNEAA AIQLFGAYKGTDRQEGLRWVLPWLTRKKIAVRANNVISDKIKVNDLRGNPIEMAAQVVWRVTDTAQALFDVDDYKEFVMA QIEAAVRSIGSRYPYDDIEHQEVTLRGNHEEVGAELRKALIERLTVAGITVDECGLTHLAYAPEIAGAMLRRQQAEAVIA ARKKLVEGAVTMVEMALQHLSDKKVVDLDDERKAAMVSNLMVVLCGERDTQPVVNAGSLY
Sequences:
>Translated_300_residues MVESGAPALNRSRETRANTQSGYWMLFIWLVLLGIAVWAAITNANADVVMAWKWIVAATAAVVGTLILCGFYLINPNEAA AIQLFGAYKGTDRQEGLRWVLPWLTRKKIAVRANNVISDKIKVNDLRGNPIEMAAQVVWRVTDTAQALFDVDDYKEFVMA QIEAAVRSIGSRYPYDDIEHQEVTLRGNHEEVGAELRKALIERLTVAGITVDECGLTHLAYAPEIAGAMLRRQQAEAVIA ARKKLVEGAVTMVEMALQHLSDKKVVDLDDERKAAMVSNLMVVLCGERDTQPVVNAGSLY >Mature_300_residues MVESGAPALNRSRETRANTQSGYWMLFIWLVLLGIAVWAAITNANADVVMAWKWIVAATAAVVGTLILCGFYLINPNEAA AIQLFGAYKGTDRQEGLRWVLPWLTRKKIAVRANNVISDKIKVNDLRGNPIEMAAQVVWRVTDTAQALFDVDDYKEFVMA QIEAAVRSIGSRYPYDDIEHQEVTLRGNHEEVGAELRKALIERLTVAGITVDECGLTHLAYAPEIAGAMLRRQQAEAVIA ARKKLVEGAVTMVEMALQHLSDKKVVDLDDERKAAMVSNLMVVLCGERDTQPVVNAGSLY
Specific function: Unknown
COG id: COG0330
COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33139; Mature: 33139
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: PS00125 SER_THR_PHOSPHATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVESGAPALNRSRETRANTQSGYWMLFIWLVLLGIAVWAAITNANADVVMAWKWIVAATA CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH AVVGTLILCGFYLINPNEAAAIQLFGAYKGTDRQEGLRWVLPWLTRKKIAVRANNVISDK HHHHHHHHHHHEEECCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHEEEECCEEECC IKVNDLRGNPIEMAAQVVWRVTDTAQALFDVDDYKEFVMAQIEAAVRSIGSRYPYDDIEH EEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QEVTLRGNHEEVGAELRKALIERLTVAGITVDECGLTHLAYAPEIAGAMLRRQQAEAVIA CEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ARKKLVEGAVTMVEMALQHLSDKKVVDLDDERKAAMVSNLMVVLCGERDTQPVVNAGSLY HHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MVESGAPALNRSRETRANTQSGYWMLFIWLVLLGIAVWAAITNANADVVMAWKWIVAATA CCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH AVVGTLILCGFYLINPNEAAAIQLFGAYKGTDRQEGLRWVLPWLTRKKIAVRANNVISDK HHHHHHHHHHHEEECCCCCEEEEEEECCCCCCHHCCHHHHHHHHHHHHHEEEECCEEECC IKVNDLRGNPIEMAAQVVWRVTDTAQALFDVDDYKEFVMAQIEAAVRSIGSRYPYDDIEH EEEECCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC QEVTLRGNHEEVGAELRKALIERLTVAGITVDECGLTHLAYAPEIAGAMLRRQQAEAVIA CEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ARKKLVEGAVTMVEMALQHLSDKKVVDLDDERKAAMVSNLMVVLCGERDTQPVVNAGSLY HHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA