Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485709
Identifier: 103485709
GI number: 103485709
Start: 223681
End: 223941
Strand: Direct
Name: 103485709
Synonym: Sala_0213
Alternate gene names: NA
Gene position: 223681-223941 (Clockwise)
Preceding gene: 103485708
Following gene: 103485710
Centisome position: 6.69
GC content: 63.22
Gene sequence:
>261_bases ATGGGTCCGTTTGAAATGGTCGTCGGCATCGTCCTCATCGTGACGATCGGCAGCATTATCCGCGCCAGGTACGGCATCCG GCGCGACCGCCACGGCAACGGCCATGTCGCCGGACACGACGTCGAGACCAAGGCGCTGCAGGCCGAAATCCGCGCGCTCA AGGAGCGCATTCAGGTGCTCGAACGCATCGCCACCGACCATAATCGCGCCGTCACGCTCGACCAGGAAATCGAGAAGCTG CGCGACGGCAGCAAGATCTGA
Upstream 100 bases:
>100_bases TCGTGACCGACAAGGGAATTGACGTCGCCGACGAGATCGAAAAGCTGCGCGACGCCCCGCTCAACTGACGCAACGATAAA AGCAGGAAAGGAACCTCCCC
Downstream 100 bases:
>100_bases ACGCCGGTAAAGGAGCAACGCTCATGGCTTTCATCACTCCCGACCTCACCACCGCCGCGATCGCGCTGACCGCGCTCACC ATCGTCAGTCTCGTCGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 86; Mature: 85
Protein sequence:
>86_residues MGPFEMVVGIVLIVTIGSIIRARYGIRRDRHGNGHVAGHDVETKALQAEIRALKERIQVLERIATDHNRAVTLDQEIEKL RDGSKI
Sequences:
>Translated_86_residues MGPFEMVVGIVLIVTIGSIIRARYGIRRDRHGNGHVAGHDVETKALQAEIRALKERIQVLERIATDHNRAVTLDQEIEKL RDGSKI >Mature_85_residues GPFEMVVGIVLIVTIGSIIRARYGIRRDRHGNGHVAGHDVETKALQAEIRALKERIQVLERIATDHNRAVTLDQEIEKLR DGSKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9652; Mature: 9521
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPFEMVVGIVLIVTIGSIIRARYGIRRDRHGNGHVAGHDVETKALQAEIRALKERIQVL CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ERIATDHNRAVTLDQEIEKLRDGSKI HHHHCCCCCEEEHHHHHHHHCCCCCC >Mature Secondary Structure GPFEMVVGIVLIVTIGSIIRARYGIRRDRHGNGHVAGHDVETKALQAEIRALKERIQVL CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH ERIATDHNRAVTLDQEIEKLRDGSKI HHHHCCCCCEEEHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA