Definition | Sphingopyxis alaskensis RB2256, complete genome. |
---|---|
Accession | NC_008048 |
Length | 3,345,170 |
Click here to switch to the map view.
The map label for this gene is 103485705
Identifier: 103485705
GI number: 103485705
Start: 222331
End: 222711
Strand: Direct
Name: 103485705
Synonym: Sala_0209
Alternate gene names: NA
Gene position: 222331-222711 (Clockwise)
Preceding gene: 103485704
Following gene: 103485706
Centisome position: 6.65
GC content: 60.37
Gene sequence:
>381_bases ATGTCTGCCAGCCGCACCAAATTCTACCTCGACAAACAGAACGCCAAATGGAGCGGCGTATGTTCGGGAATCGCGGACTA TAGCGGGATCGACGTGCTCTGGGTTCGCGTCGGCGCCGTGCTGCTCACCCTGATGGGCGGCTTTCCCTGGACGTTGATCG CTTACTGGATGGTCGCCTGGATGGGATCGCCCAAGCCTTTCGCGCTATACGGATCGCAGGAAGAAGCCAAGTTCTGGCAA GGGGTGCGCAGCAACCCCGCCGCGTCGACCCGCGACATCAAGTCGCGCTTTCGCGACATCGATCGCCGGCTTGCCGACAT CGAACTTTACTACACCAGTCACAACCGTCGGCTCGCCGACGAGATTGAAAGCCTGCGCTGA
Upstream 100 bases:
>100_bases GTCGAACGGATTATCAGCGCCGACCATCCCGACTTCCGCCCCGCGGTACGCAGCGATGAAGAGCTGGCGCAGCTTGAAAA CATAAACCGGAGGAACTGAG
Downstream 100 bases:
>100_bases GCGGCGGCTGAAACGCAACAGGGAGACTTTTCATGAATTTCGGTGGCACCACCTTCGTCCTCGCCATCATCGCCCTGTCG ATCGGCGGCTGGATGTTCAC
Product: phage shock protein C, PspC
Products: NA
Alternate protein names: Phage Shock Protein C; Stress-Responsive Transcriptional Regulator
Number of amino acids: Translated: 126; Mature: 125
Protein sequence:
>126_residues MSASRTKFYLDKQNAKWSGVCSGIADYSGIDVLWVRVGAVLLTLMGGFPWTLIAYWMVAWMGSPKPFALYGSQEEAKFWQ GVRSNPAASTRDIKSRFRDIDRRLADIELYYTSHNRRLADEIESLR
Sequences:
>Translated_126_residues MSASRTKFYLDKQNAKWSGVCSGIADYSGIDVLWVRVGAVLLTLMGGFPWTLIAYWMVAWMGSPKPFALYGSQEEAKFWQ GVRSNPAASTRDIKSRFRDIDRRLADIELYYTSHNRRLADEIESLR >Mature_125_residues SASRTKFYLDKQNAKWSGVCSGIADYSGIDVLWVRVGAVLLTLMGGFPWTLIAYWMVAWMGSPKPFALYGSQEEAKFWQG VRSNPAASTRDIKSRFRDIDRRLADIELYYTSHNRRLADEIESLR
Specific function: Unknown
COG id: COG1983
COG function: function code KT; Putative stress-responsive transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14432; Mature: 14300
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASRTKFYLDKQNAKWSGVCSGIADYSGIDVLWVRVGAVLLTLMGGFPWTLIAYWMVAW CCCCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH MGSPKPFALYGSQEEAKFWQGVRSNPAASTRDIKSRFRDIDRRLADIELYYTSHNRRLAD CCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH EIESLR HHHHCC >Mature Secondary Structure SASRTKFYLDKQNAKWSGVCSGIADYSGIDVLWVRVGAVLLTLMGGFPWTLIAYWMVAW CCCCCEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH MGSPKPFALYGSQEEAKFWQGVRSNPAASTRDIKSRFRDIDRRLADIELYYTSHNRRLAD CCCCCCEEEECCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH EIESLR HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA