| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99081026
Identifier: 99081026
GI number: 99081026
Start: 1274224
End: 1275156
Strand: Direct
Name: 99081026
Synonym: TM1040_1185
Alternate gene names: NA
Gene position: 1274224-1275156 (Clockwise)
Preceding gene: 99081025
Following gene: 99081027
Centisome position: 39.81
GC content: 58.95
Gene sequence:
>933_bases ATGGCTTTGCTGAACTTCAAAAAACGTGCGGCTGACACAGAGATCACCGTGAACCCGGACGTGGAGGCCTTTCTGCAGGG CTATTCCATCGAGGTGATGCCGCGCACCGCGCAAAAGGTCGAGGACTTCCGCGAGCTTCTGCCCGCCGGCACCCGAGTCT ATATTGCCCACATTGAGGGCACCCCGATCGAGGATATGATCGCCACAGCCAAACGCCTGAATGACGAAGGCTACCCGGTG ATGCCGCATTTCCCGGCCCGCATCATCAAGGATGAGGCAACGCTTGCCGATTGGATTGCGCGCTATCAGGGTGAGGCGGA TGTCAAACAGGCCCTGCTGCTGGCCGGTGGCGTGGCGCAGCCTCATGGTGCCTTTGACAGCTCCATGCAGCTTTTGGAGA CCGGCCTCTTCGACAAGGCAGGGTTCACCAACCTGCATGTGGCGGGCCACCCCGAGGGCAACAAGGATATTGATCCCGAC GGCTCCATGAAAAACGTCTCCGAAGCGCTTCAGTGGAAACAGAAATTTTCCGAGCGGACCGACGCGAAAATGGCGCTGGC AACCCAGTTTGCATTTGAGGCAAAGCCGATCATCGCCTGGGCGAACGGCCTGAAAGACGCGGCCGTTGACCTGCCGATCC ATATCGGGATCGCGGGGCCTGCCAAGCTGCAGACGCTCATTAAATTCGCCATTGCCTGCGGTGTGGGACCGTCGCTCAAG GTGCTTCAGAAACGCGCCATGGATGTCACCAAGCTGATGCTGCCCTATGAGCCCAACGAGGTTGTGGCTGAGCTTGCGGC CTACAAGGCGGCAAACCCCGATTTCAACATCACCAATGTTCACTTCTTCCCGCTCGGCGGCATCAAAACCAACGCCACCT GGGCCATCAACAATGGCGGCGAGTCCACTCGCCCCGCCAAACAGCAAGGATAA
Upstream 100 bases:
>100_bases CCACGCGTCTGGAGCAGGAATACGATCAGGACCGCCTCAAGGCCTTGATCGCAAACGATGGCTGGGCATGACAGCCCTCA ACGCATTATGGGAGGCCGCC
Downstream 100 bases:
>100_bases ACCATGACCCGTACTGTCGTAGAATCAAAAACAAAAACTGCTGTTCTGGGCTTTGATGAACCCTTCTGCGTGATCGGCGA GCGCATCAACCCCACCGGCC
Product: metF protein-like
Products: NA
Alternate protein names: 5 10-Methylenetetrahydrofolate Reductase; Methylenetetrahydrofolate Reductase Family Protein; Metfprotein-Like; MetF-Like Protein; Metfprotein -Like Protein
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MALLNFKKRAADTEITVNPDVEAFLQGYSIEVMPRTAQKVEDFRELLPAGTRVYIAHIEGTPIEDMIATAKRLNDEGYPV MPHFPARIIKDEATLADWIARYQGEADVKQALLLAGGVAQPHGAFDSSMQLLETGLFDKAGFTNLHVAGHPEGNKDIDPD GSMKNVSEALQWKQKFSERTDAKMALATQFAFEAKPIIAWANGLKDAAVDLPIHIGIAGPAKLQTLIKFAIACGVGPSLK VLQKRAMDVTKLMLPYEPNEVVAELAAYKAANPDFNITNVHFFPLGGIKTNATWAINNGGESTRPAKQQG
Sequences:
>Translated_310_residues MALLNFKKRAADTEITVNPDVEAFLQGYSIEVMPRTAQKVEDFRELLPAGTRVYIAHIEGTPIEDMIATAKRLNDEGYPV MPHFPARIIKDEATLADWIARYQGEADVKQALLLAGGVAQPHGAFDSSMQLLETGLFDKAGFTNLHVAGHPEGNKDIDPD GSMKNVSEALQWKQKFSERTDAKMALATQFAFEAKPIIAWANGLKDAAVDLPIHIGIAGPAKLQTLIKFAIACGVGPSLK VLQKRAMDVTKLMLPYEPNEVVAELAAYKAANPDFNITNVHFFPLGGIKTNATWAINNGGESTRPAKQQG >Mature_309_residues ALLNFKKRAADTEITVNPDVEAFLQGYSIEVMPRTAQKVEDFRELLPAGTRVYIAHIEGTPIEDMIATAKRLNDEGYPVM PHFPARIIKDEATLADWIARYQGEADVKQALLLAGGVAQPHGAFDSSMQLLETGLFDKAGFTNLHVAGHPEGNKDIDPDG SMKNVSEALQWKQKFSERTDAKMALATQFAFEAKPIIAWANGLKDAAVDLPIHIGIAGPAKLQTLIKFAIACGVGPSLKV LQKRAMDVTKLMLPYEPNEVVAELAAYKAANPDFNITNVHFFPLGGIKTNATWAINNGGESTRPAKQQG
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33736; Mature: 33605
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLNFKKRAADTEITVNPDVEAFLQGYSIEVMPRTAQKVEDFRELLPAGTRVYIAHIEG CCCCCCHHHCCCCEEEECCCHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECC TPIEDMIATAKRLNDEGYPVMPHFPARIIKDEATLADWIARYQGEADVKQALLLAGGVAQ CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC PHGAFDSSMQLLETGLFDKAGFTNLHVAGHPEGNKDIDPDGSMKNVSEALQWKQKFSERT CCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DAKMALATQFAFEAKPIIAWANGLKDAAVDLPIHIGIAGPAKLQTLIKFAIACGVGPSLK HHHHHHHHHHHHCCCCEEEECCCCCCCEEECEEEEECCCHHHHHHHHHHHHHHCCCCHHH VLQKRAMDVTKLMLPYEPNEVVAELAAYKAANPDFNITNVHFFPLGGIKTNATWAINNGG HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEECCCEEEECCCC ESTRPAKQQG CCCCCCCCCC >Mature Secondary Structure ALLNFKKRAADTEITVNPDVEAFLQGYSIEVMPRTAQKVEDFRELLPAGTRVYIAHIEG CCCCCHHHCCCCEEEECCCHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCEEEEEEECC TPIEDMIATAKRLNDEGYPVMPHFPARIIKDEATLADWIARYQGEADVKQALLLAGGVAQ CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC PHGAFDSSMQLLETGLFDKAGFTNLHVAGHPEGNKDIDPDGSMKNVSEALQWKQKFSERT CCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH DAKMALATQFAFEAKPIIAWANGLKDAAVDLPIHIGIAGPAKLQTLIKFAIACGVGPSLK HHHHHHHHHHHHCCCCEEEECCCCCCCEEECEEEEECCCHHHHHHHHHHHHHHCCCCHHH VLQKRAMDVTKLMLPYEPNEVVAELAAYKAANPDFNITNVHFFPLGGIKTNATWAINNGG HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCEECCCEEEECCCC ESTRPAKQQG CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA