| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ppi [H]
Identifier: 99080927
GI number: 99080927
Start: 1161820
End: 1162368
Strand: Direct
Name: ppi [H]
Synonym: TM1040_1086
Alternate gene names: 99080927
Gene position: 1161820-1162368 (Clockwise)
Preceding gene: 99080926
Following gene: 99080933
Centisome position: 36.3
GC content: 61.75
Gene sequence:
>549_bases ATGCTTAAGCGTCTGAGCGCACTGGCCCTTTTGGCGGCGTCGCCCGCTTTTGCCACCGGTCTGGAGATCCAGGTCGAGGG CGAGGCCAATGGCACCATCGTGATCGATCTCTTGGAAGACGTGGCGCCGAACCACGTCGAACAGATCGCTGCACTGGCCG CTGAGGGCCAGTATGATGGCGTGGTATTTCACCGCGTGATCCAGGGCTTTATGGCGCAGACCGGTGATGTGCAGAACGGT CGTCTCGGGTCCGACATGCGCTATGCTGGCACCGGCGGCTCGGACCGCCCGGATCTGGCCGCCGAGTTCTCTGACGTGCC GTTCGATCGCGGCGTCGTTGGCATGGCGCGCTCGCAGGATCCCGACAGCGCCAACTCGCAGTTCTTTATCATGTTTGATG AGGGCCACTTCCTGAACGGTCAATACACCGTTGTGGGCCGTGTCACCGAAGGCATGGAGATCGTCGATCAGATCAAACGC GGCCACCCGCGGTCTGGTGCAATCACCGGCAGGCCGGATGTGATGAGCAAGGTCACCGTCACCGAGTAA
Upstream 100 bases:
>100_bases TATGGCCGCGTCATCGAGGGCATGGAGCATGTGGATGCGATCACCCGTGGCGAGCCGCCAGCAAAGCCTGATCGCATGAT CTCCGTGAAGGTGGCCGCCG
Downstream 100 bases:
>100_bases GGGCGCGGGTCTGTTAAGATAGAGAGGGGCTCTGATACGAGATGTATCAGAGCCCCTCTTTTATTTATCTGGTCTGTTCT TTTAGGGGCGATCAAGTGAA
Product: peptidyl-prolyl cis-trans isomerase, cyclophilin type
Products: NA
Alternate protein names: PPIase; Rotamase [H]
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MLKRLSALALLAASPAFATGLEIQVEGEANGTIVIDLLEDVAPNHVEQIAALAAEGQYDGVVFHRVIQGFMAQTGDVQNG RLGSDMRYAGTGGSDRPDLAAEFSDVPFDRGVVGMARSQDPDSANSQFFIMFDEGHFLNGQYTVVGRVTEGMEIVDQIKR GHPRSGAITGRPDVMSKVTVTE
Sequences:
>Translated_182_residues MLKRLSALALLAASPAFATGLEIQVEGEANGTIVIDLLEDVAPNHVEQIAALAAEGQYDGVVFHRVIQGFMAQTGDVQNG RLGSDMRYAGTGGSDRPDLAAEFSDVPFDRGVVGMARSQDPDSANSQFFIMFDEGHFLNGQYTVVGRVTEGMEIVDQIKR GHPRSGAITGRPDVMSKVTVTE >Mature_182_residues MLKRLSALALLAASPAFATGLEIQVEGEANGTIVIDLLEDVAPNHVEQIAALAAEGQYDGVVFHRVIQGFMAQTGDVQNG RLGSDMRYAGTGGSDRPDLAAEFSDVPFDRGVVGMARSQDPDSANSQFFIMFDEGHFLNGQYTVVGRVTEGMEIVDQIKR GHPRSGAITGRPDVMSKVTVTE
Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]
COG id: COG0652
COG function: function code O; Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PPIase cyclophilin-type domain [H]
Homologues:
Organism=Homo sapiens, GI10863927, Length=159, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=5e-16, Organism=Homo sapiens, GI19557636, Length=131, Percent_Identity=36.6412213740458, Blast_Score=80, Evalue=8e-16, Organism=Homo sapiens, GI5031987, Length=159, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-15, Organism=Homo sapiens, GI7706339, Length=129, Percent_Identity=34.8837209302326, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI45439316, Length=160, Percent_Identity=31.875, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI169214050, Length=172, Percent_Identity=31.3953488372093, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI239751853, Length=157, Percent_Identity=32.484076433121, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI113428306, Length=157, Percent_Identity=32.484076433121, Blast_Score=72, Evalue=2e-13, Organism=Homo sapiens, GI310110104, Length=154, Percent_Identity=31.1688311688312, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI310129267, Length=159, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI310120620, Length=159, Percent_Identity=30.188679245283, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI5174637, Length=161, Percent_Identity=31.6770186335404, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4505991, Length=156, Percent_Identity=35.2564102564103, Blast_Score=71, Evalue=5e-13, Organism=Homo sapiens, GI303305009, Length=147, Percent_Identity=31.9727891156463, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI310127646, Length=159, Percent_Identity=30.8176100628931, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI310114371, Length=159, Percent_Identity=30.8176100628931, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI310119221, Length=159, Percent_Identity=30.8176100628931, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI24308049, Length=129, Percent_Identity=34.1085271317829, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI22547212, Length=127, Percent_Identity=33.8582677165354, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7657473, Length=127, Percent_Identity=33.8582677165354, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI22547215, Length=127, Percent_Identity=33.8582677165354, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI1786736, Length=150, Percent_Identity=36, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1789763, Length=166, Percent_Identity=32.5301204819277, Blast_Score=69, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71980590, Length=133, Percent_Identity=36.8421052631579, Blast_Score=77, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71980594, Length=133, Percent_Identity=36.8421052631579, Blast_Score=77, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17506311, Length=148, Percent_Identity=36.4864864864865, Blast_Score=76, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17539498, Length=156, Percent_Identity=33.974358974359, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17551284, Length=154, Percent_Identity=34.4155844155844, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17551282, Length=155, Percent_Identity=34.1935483870968, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17565860, Length=185, Percent_Identity=32.4324324324324, Blast_Score=72, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17552780, Length=147, Percent_Identity=36.0544217687075, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17559074, Length=167, Percent_Identity=31.1377245508982, Blast_Score=70, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17566266, Length=168, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17539496, Length=131, Percent_Identity=32.824427480916, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17552782, Length=168, Percent_Identity=29.7619047619048, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320359, Length=159, Percent_Identity=31.4465408805031, Blast_Score=69, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6323562, Length=156, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI17986117, Length=153, Percent_Identity=35.9477124183007, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI24652460, Length=154, Percent_Identity=34.4155844155844, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24664125, Length=147, Percent_Identity=35.3741496598639, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357783, Length=147, Percent_Identity=35.3741496598639, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI45549139, Length=159, Percent_Identity=30.8176100628931, Blast_Score=71, Evalue=4e-13, Organism=Drosophila melanogaster, GI20130249, Length=147, Percent_Identity=34.6938775510204, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI17647301, Length=154, Percent_Identity=33.1168831168831, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24661775, Length=164, Percent_Identity=31.7073170731707, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355237, Length=164, Percent_Identity=31.7073170731707, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24661771, Length=164, Percent_Identity=31.7073170731707, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24650807, Length=154, Percent_Identity=31.8181818181818, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: 780 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015891 - InterPro: IPR020892 - InterPro: IPR002130 [H]
Pfam domain/function: PF00160 Pro_isomerase [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 19455; Mature: 19455
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: PS00170 CSA_PPIASE_1 ; PS50072 CSA_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRLSALALLAASPAFATGLEIQVEGEANGTIVIDLLEDVAPNHVEQIAALAAEGQYDG CCCHHHHHHHHHCCCCHHCCCEEEEECCCCCEEEEEEHHHCCCHHHHHHHHHHCCCCCCC VVFHRVIQGFMAQTGDVQNGRLGSDMRYAGTGGSDRPDLAAEFSDVPFDRGVVGMARSQD HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEECCCCCC PDSANSQFFIMFDEGHFLNGQYTVVGRVTEGMEIVDQIKRGHPRSGAITGRPDVMSKVTV CCCCCCEEEEEECCCEEECCEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHCEEEE TE CC >Mature Secondary Structure MLKRLSALALLAASPAFATGLEIQVEGEANGTIVIDLLEDVAPNHVEQIAALAAEGQYDG CCCHHHHHHHHHCCCCHHCCCEEEEECCCCCEEEEEEHHHCCCHHHHHHHHHHCCCCCCC VVFHRVIQGFMAQTGDVQNGRLGSDMRYAGTGGSDRPDLAAEFSDVPFDRGVVGMARSQD HHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCHHHCCCCCCCCCEEECCCCCC PDSANSQFFIMFDEGHFLNGQYTVVGRVTEGMEIVDQIKRGHPRSGAITGRPDVMSKVTV CCCCCCEEEEEECCCEEECCEEEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCHHCEEEE TE CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA