| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080911
Identifier: 99080911
GI number: 99080911
Start: 1144746
End: 1145624
Strand: Direct
Name: 99080911
Synonym: TM1040_1070
Alternate gene names: NA
Gene position: 1144746-1145624 (Clockwise)
Preceding gene: 99080910
Following gene: 99080912
Centisome position: 35.76
GC content: 64.96
Gene sequence:
>879_bases ATGGATCGCGAAGGCTTGAACACGCATCTCAAATCCGGGGCCACCACGGTGTGCCGCGCCTGGGAAGTCCGTCGCACGGA TGGCGTGACGCTGGGGTTCACCGATCATGACCGGGACCTGAGCTTTGACGGGATGACCTTTCGCGCCGGAACCGGCCTCA GCGCGCGCAGCCTGATGCAGAGCACCGGGCTTGCGGTCGACAACAGCGAAGCGCTCGGCGCGCTCAGCTCCGATGCGGTG CGCGAGGCGGATATTGAATCCGGGCGCTATGACGGCGCGGAGGTGCGCGCGTGGTTGGTGAACTGGGCGGACACAACTGA GCGCGCCCTGCAGTTTCGCGGCTCCCTCGGCGAGATCCGCCGCGCAGGCGGCGCCTTTGAGGCCGAATTGCGTGGCCTCA CCGAAGCGTTGAACCAGCCGCTTGGGCGGGTGTTCCAAAAGCCGTGCAGCGCGGTTCTGGGCGACGCGGCGTGCAAATTC GACCTGAGTACGGCGGGCTATGCTGTTGAAATTGATGTTGAAACATTACGCGATGGGCAGTTGTTCGCGTGGGCGAGCCT CGATGGATTTGCGCCGGGGTGGTTCACTGGCGGGCGGCTTACGGTTCTGGGTGGGGCGGGCGCAGGTCTCTGGGCCCCAA TCCGGTCGGACAGTCTGAACGCGCGCCGCGAAATCACCCTCTGGCAGCCGATCCGCGCCGATATTCAGCCGGGCGACTTG GTGCGTCTGAGCGCAGGCTGCGACAAACGGCAGAGCACCTGTCGGCTGAAGTTCGACAATCTGGTGAATTATCAGGGCTT TCCCGACATTCCCGGCGAGGACTGGATGGTGGCAGTCCCCAAGCGCACCGGCCAGAACACCGGTGGCAGCCGCAGATGA
Upstream 100 bases:
>100_bases ACGTGCCAGTGCGCTTTGACACGGATCGCATCCAGACCTCGGTGGCGTCGTTTCAGGCGGGCGAGGCCCCGAATGTGCCA GTGGTGGAGGTGCGGGTGTG
Downstream 100 bases:
>100_bases GCCGCGACATCAACACAGAGGCGGTGGCCCTCGCGCGGCTCTGGCTGGGCACGCCCTATCGCCATCAGGGGGCCACGCGG GGGGCGGGCTGCGATTGTCT
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQSTGLAVDNSEALGALSSDAV READIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIRRAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKF DLSTAGYAVEIDVETLRDGQLFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR
Sequences:
>Translated_292_residues MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQSTGLAVDNSEALGALSSDAV READIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIRRAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKF DLSTAGYAVEIDVETLRDGQLFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR >Mature_292_residues MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQSTGLAVDNSEALGALSSDAV READIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIRRAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKF DLSTAGYAVEIDVETLRDGQLFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR
Specific function: Unknown
COG id: COG5449
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31620; Mature: 31620
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQ CCCCCCCHHHHCCCHHHHHHEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHH STGLAVDNSEALGALSSDAVREADIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIR HHCCEEECCHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCHHHHH RAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKFDLSTAGYAVEIDVETLRDGQ HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEEEEHHCCCCCC LFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure MDREGLNTHLKSGATTVCRAWEVRRTDGVTLGFTDHDRDLSFDGMTFRAGTGLSARSLMQ CCCCCCCHHHHCCCHHHHHHEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHHHH STGLAVDNSEALGALSSDAVREADIESGRYDGAEVRAWLVNWADTTERALQFRGSLGEIR HHCCEEECCHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEECCHHHHHHHHHHCCHHHHH RAGGAFEAELRGLTEALNQPLGRVFQKPCSAVLGDAACKFDLSTAGYAVEIDVETLRDGQ HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCCEEEEEEHHCCCCCC LFAWASLDGFAPGWFTGGRLTVLGGAGAGLWAPIRSDSLNARREITLWQPIRADIQPGDL EEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE VRLSAGCDKRQSTCRLKFDNLVNYQGFPDIPGEDWMVAVPKRTGQNTGGSRR EEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA