| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is sam [H]
Identifier: 99080770
GI number: 99080770
Start: 992140
End: 993033
Strand: Direct
Name: sam [H]
Synonym: TM1040_0929
Alternate gene names: 99080770
Gene position: 992140-993033 (Clockwise)
Preceding gene: 99080769
Following gene: 99080772
Centisome position: 31.0
GC content: 62.75
Gene sequence:
>894_bases ATGGATAATGTCAAAGGTATTTTGCTGCTGCTGGTCGCGATGGTCGGCTTCACAGTCGAGGATCTCTTTATCAAGCAGCT CTCCGGTAGCCTGTCGGTGGGGCAGATCCTGGTGTTCATCGGGCTGGGGGCTGGGCTGTTGTTCTATGTGGCGCTGCGCC TGCAAAAGCAGCGCCTCTGGACCCGGGAGGCCTGGCAGAGCATGCCCGTGCTGCGCGCATTGGCCGAAGGGGGCGCGGCC ATGAGCTTTGCCACCGCGCTGGCGCTGGTGGACATCTCGGTGGTGGCGGCCGTGTTTCAGGCGACGCCGCTGGCGATCAC CATGGGGGCTGCGCTGTTTCTGGGAGAACAGGTCGGCTGGCGGCGCTGGAGCGCGATTTTTGTCGGCTTCATGGGGGTTT TGATCATCATTCGCCCAGGTCTTGACGGGTTTGAGCCCAACGCGCTTCTGGTATTGATCTCGGTGTTCTTTGTGGCGGCG CGCGATCTGATGACACGGCGGATGCCTGCGAGCATTCCTTCCTCCGTGGTGAGCGTACAGGCCTACCTCGCGGTGGTTGT CGCCGGCGGGGTGATGCTGATGTTCACACCGCAAACGCTGGTTGCGCCAACGTCCTTTGAATGGGCGATGCTGGCGGGGG GGACGCTTTTTGGGGTGATCGCCTACTATGGCATCGTCACCGCCACGCGGATTGCAGATGCCGCTGTCATCACGCCGTTT CGCTACTCGCGACTGGTGTTTTCCATGATCGGCGGCGCGATTGTGTTTTCGGAGCGCCCTGACGGGATGACGCTGCTCGG CTCCGGGCTGATTATCGCAACCGGGCTCTATACCTTTGTGCGCGAGCGCCGTCTGGCGCGTCAGGCCGCGCGACTGGCGG CACAGCCCGCCTGA
Upstream 100 bases:
>100_bases ACAACTTCTGCTGAGGCAGGTGCGATTTCACGCTTGCGTCATGTGGTCGCATCGCGCCATGGCTGGGGTGTATTCAACGC CCCGCCAAGGACGCACGCCC
Downstream 100 bases:
>100_bases GATCAGGCTGCGCGTGGGGTCAAGCGCTGTCGCGCGCCGCGCACGCCGACCCAGATGCAGAGTGTTGTTAGCAGGAAGTA GACCGCGATGCCGTAGCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MDNVKGILLLLVAMVGFTVEDLFIKQLSGSLSVGQILVFIGLGAGLLFYVALRLQKQRLWTREAWQSMPVLRALAEGGAA MSFATALALVDISVVAAVFQATPLAITMGAALFLGEQVGWRRWSAIFVGFMGVLIIIRPGLDGFEPNALLVLISVFFVAA RDLMTRRMPASIPSSVVSVQAYLAVVVAGGVMLMFTPQTLVAPTSFEWAMLAGGTLFGVIAYYGIVTATRIADAAVITPF RYSRLVFSMIGGAIVFSERPDGMTLLGSGLIIATGLYTFVRERRLARQAARLAAQPA
Sequences:
>Translated_297_residues MDNVKGILLLLVAMVGFTVEDLFIKQLSGSLSVGQILVFIGLGAGLLFYVALRLQKQRLWTREAWQSMPVLRALAEGGAA MSFATALALVDISVVAAVFQATPLAITMGAALFLGEQVGWRRWSAIFVGFMGVLIIIRPGLDGFEPNALLVLISVFFVAA RDLMTRRMPASIPSSVVSVQAYLAVVVAGGVMLMFTPQTLVAPTSFEWAMLAGGTLFGVIAYYGIVTATRIADAAVITPF RYSRLVFSMIGGAIVFSERPDGMTLLGSGLIIATGLYTFVRERRLARQAARLAAQPA >Mature_297_residues MDNVKGILLLLVAMVGFTVEDLFIKQLSGSLSVGQILVFIGLGAGLLFYVALRLQKQRLWTREAWQSMPVLRALAEGGAA MSFATALALVDISVVAAVFQATPLAITMGAALFLGEQVGWRRWSAIFVGFMGVLIIIRPGLDGFEPNALLVLISVFFVAA RDLMTRRMPASIPSSVVSVQAYLAVVVAGGVMLMFTPQTLVAPTSFEWAMLAGGTLFGVIAYYGIVTATRIADAAVITPF RYSRLVFSMIGGAIVFSERPDGMTLLGSGLIIATGLYTFVRERRLARQAARLAAQPA
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31785; Mature: 31785
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNVKGILLLLVAMVGFTVEDLFIKQLSGSLSVGQILVFIGLGAGLLFYVALRLQKQRLW CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TREAWQSMPVLRALAEGGAAMSFATALALVDISVVAAVFQATPLAITMGAALFLGEQVGW HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RRWSAIFVGFMGVLIIIRPGLDGFEPNALLVLISVFFVAARDLMTRRMPASIPSSVVSVQ HHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AYLAVVVAGGVMLMFTPQTLVAPTSFEWAMLAGGTLFGVIAYYGIVTATRIADAAVITPF HHHHHHHHCCEEEEECCCHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHH RYSRLVFSMIGGAIVFSERPDGMTLLGSGLIIATGLYTFVRERRLARQAARLAAQPA HHHHHHHHHHCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MDNVKGILLLLVAMVGFTVEDLFIKQLSGSLSVGQILVFIGLGAGLLFYVALRLQKQRLW CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH TREAWQSMPVLRALAEGGAAMSFATALALVDISVVAAVFQATPLAITMGAALFLGEQVGW HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RRWSAIFVGFMGVLIIIRPGLDGFEPNALLVLISVFFVAARDLMTRRMPASIPSSVVSVQ HHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AYLAVVVAGGVMLMFTPQTLVAPTSFEWAMLAGGTLFGVIAYYGIVTATRIADAAVITPF HHHHHHHHCCEEEEECCCHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHH RYSRLVFSMIGGAIVFSERPDGMTLLGSGLIIATGLYTFVRERRLARQAARLAAQPA HHHHHHHHHHCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]