| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080745
Identifier: 99080745
GI number: 99080745
Start: 965892
End: 966827
Strand: Direct
Name: 99080745
Synonym: TM1040_0904
Alternate gene names: NA
Gene position: 965892-966827 (Clockwise)
Preceding gene: 99080744
Following gene: 99080746
Centisome position: 30.18
GC content: 66.35
Gene sequence:
>936_bases ATGGCCGCGTTTCTGGGCGCTGCGGCCTCGCTGGCACTGGTGGTGAGCATCTCCATGTGGGGCTACAAGCTGATCATGCG CGATGTCTCCGGCGTGCCGGTGGTCAGCGCGCTTTCGGGGCCGATGCGCGTGGCGCCGGAAAACCCGGGCGGGGAACTTG CAGACAATCAAGGGCTTGCAGTGAACTCCGTGGCCGCAAACGGGATTGCCGAAGATCCCGCCGACCGCTTGCAGCTGGCA CCGCAGGCGATTTCGCTCACCGAAGACGACCAGCCGATCCCGGTTCTGACAGAGGCCGCCGAAGCCCAGGCCGCACTGGA GGCCGAAGCGCTGGCCCCGGCGGTTGAGCGGGAAACCGCAGCGATTGAGGCGGGCAATGATGTCTCGCCGCTCGAGCAGC GCAGCAATGATATCGACGCGTTGGTGGCATCGCTCACCGAAGGGGCGGTTCCGCTTGAGGATCTGCGTGAGACTTCGGCA TCGATCACCCAGCCAGAACCGCTTGCGGCGGCTGAGGTTGCGGCGATCACCACGGTACCGGCGGCTGTCCGCAATGCGCC CGGCGTGCGCGAAACCCCGCGCCCAATGGTGCGCCCGGCGCGGTTTGCGCCTGCGCCCGCAGCCAGTGCAGACACCACAC AAGCCGCGCGCGCCGCGGTTGATATTGACCCCAAGAGCCTTGAGGTCGGGACCCGTCTGGCACAGCTAGGCGCCTATGAG AGTGCCGAGGTGGCGCGCAGCGAATGGACCCGCATCAGCGCCAAGTTTGGTGACTTCTTTGACGACAAGGCCCGCGTGGT CCAGCGCGCCGAGAGCGGTGGGCGAATCTTCTACCGGTTGCGCGCACATGGGTTTGAAGACCTGTCGGACGCGCGCCGCT TCTGCTCGGCGCTGGTGGCGGGCAATGCAGATTGTATCCCTGTGACGATGCGCTGA
Upstream 100 bases:
>100_bases GGCGGGCTATGACTATGTGTCCGACTACGGCGATGCCTATGGCGGCGACGAGGATGAAATGTTTGCACCGCCGCCGGGCG GGCGCAGCGAGTTCGGCCGT
Downstream 100 bases:
>100_bases TGCGGTTCGGGGCGACCATTCTGGACGCAGAAGGACTGCGTCTCACCGCCGATGAAAAGGCGCTGTTTCGCGAAGCAGCG CCTTTTGGCTTTATTCTCTT
Product: sporulation related
Products: NA
Alternate protein names: Sporulation And Repeat Protein; Sporulation Domain-Containing Protein; Sporulation
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MAAFLGAAASLALVVSISMWGYKLIMRDVSGVPVVSALSGPMRVAPENPGGELADNQGLAVNSVAANGIAEDPADRLQLA PQAISLTEDDQPIPVLTEAAEAQAALEAEALAPAVERETAAIEAGNDVSPLEQRSNDIDALVASLTEGAVPLEDLRETSA SITQPEPLAAAEVAAITTVPAAVRNAPGVRETPRPMVRPARFAPAPAASADTTQAARAAVDIDPKSLEVGTRLAQLGAYE SAEVARSEWTRISAKFGDFFDDKARVVQRAESGGRIFYRLRAHGFEDLSDARRFCSALVAGNADCIPVTMR
Sequences:
>Translated_311_residues MAAFLGAAASLALVVSISMWGYKLIMRDVSGVPVVSALSGPMRVAPENPGGELADNQGLAVNSVAANGIAEDPADRLQLA PQAISLTEDDQPIPVLTEAAEAQAALEAEALAPAVERETAAIEAGNDVSPLEQRSNDIDALVASLTEGAVPLEDLRETSA SITQPEPLAAAEVAAITTVPAAVRNAPGVRETPRPMVRPARFAPAPAASADTTQAARAAVDIDPKSLEVGTRLAQLGAYE SAEVARSEWTRISAKFGDFFDDKARVVQRAESGGRIFYRLRAHGFEDLSDARRFCSALVAGNADCIPVTMR >Mature_310_residues AAFLGAAASLALVVSISMWGYKLIMRDVSGVPVVSALSGPMRVAPENPGGELADNQGLAVNSVAANGIAEDPADRLQLAP QAISLTEDDQPIPVLTEAAEAQAALEAEALAPAVERETAAIEAGNDVSPLEQRSNDIDALVASLTEGAVPLEDLRETSAS ITQPEPLAAAEVAAITTVPAAVRNAPGVRETPRPMVRPARFAPAPAASADTTQAARAAVDIDPKSLEVGTRLAQLGAYES AEVARSEWTRISAKFGDFFDDKARVVQRAESGGRIFYRLRAHGFEDLSDARRFCSALVAGNADCIPVTMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32465; Mature: 32334
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAFLGAAASLALVVSISMWGYKLIMRDVSGVPVVSALSGPMRVAPENPGGELADNQGLA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCE VNSVAANGIAEDPADRLQLAPQAISLTEDDQPIPVLTEAAEAQAALEAEALAPAVERETA EEHHHHCCCCCCCHHHHHHCCHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AIEAGNDVSPLEQRSNDIDALVASLTEGAVPLEDLRETSASITQPEPLAAAEVAAITTVP HEECCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH AAVRNAPGVRETPRPMVRPARFAPAPAASADTTQAARAAVDIDPKSLEVGTRLAQLGAYE HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCHHHHHHHHHHHHCCCC SAEVARSEWTRISAKFGDFFDDKARVVQRAESGGRIFYRLRAHGFEDLSDARRFCSALVA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHC GNADCIPVTMR CCCCEEEEECC >Mature Secondary Structure AAFLGAAASLALVVSISMWGYKLIMRDVSGVPVVSALSGPMRVAPENPGGELADNQGLA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCE VNSVAANGIAEDPADRLQLAPQAISLTEDDQPIPVLTEAAEAQAALEAEALAPAVERETA EEHHHHCCCCCCCHHHHHHCCHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AIEAGNDVSPLEQRSNDIDALVASLTEGAVPLEDLRETSASITQPEPLAAAEVAAITTVP HEECCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH AAVRNAPGVRETPRPMVRPARFAPAPAASADTTQAARAAVDIDPKSLEVGTRLAQLGAYE HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEECCCCHHHHHHHHHHHHCCCC SAEVARSEWTRISAKFGDFFDDKARVVQRAESGGRIFYRLRAHGFEDLSDARRFCSALVA HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHC GNADCIPVTMR CCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA