| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080741
Identifier: 99080741
GI number: 99080741
Start: 960714
End: 961715
Strand: Direct
Name: 99080741
Synonym: TM1040_0900
Alternate gene names: NA
Gene position: 960714-961715 (Clockwise)
Preceding gene: 99080740
Following gene: 99080743
Centisome position: 30.01
GC content: 61.18
Gene sequence:
>1002_bases ATGAGCCCTGTCGCCACAGGGGTCCTGGCCGTCTTGCTCTATACGGGGCTGATCGCGGCGGCGGATGGGATCGTGAAACT GATGGCTGGGGGATTTGCTCCGGCGCAGCTTTTTGCTTTGTCGGGTCTTTTGGTGGCGGGGTTCTGTGTTATCGCGGGGC GGCTGCAGGGGCATCCTGACGGTCTGCGCACCAACTGCAAACGGGCGATGTTGCTGCGATCGGGCGCAACTGTGCTGTCC TGCACTTCCTTCTTTTTTGCGTTTCGCTATCTGGCATTGGCCGAGGTGTTTGTCTTTATCGCGCTGATGCCGCTGATGGC GGCGATGATGTCGGGGCTGATCCTCAAGGAGCGCATCCGCCCCGTTGTCTGGCTGGCGCTGAGCCTTGGGGTGATCGGCA TTCTGGTGATGCGTCCCACGGTGCAGGTCGGAGGGGCTCTTGGGTCGGCGCTGGCGTTGAGCGGGGTTGGGTTTGGGACG CTGTCGATCATCATGGCGCGCTACATCAGCCGATACGAGAGCAACGTGCTGGCGCAGGTCTTCTATCCGAACCTGACGCT TGGGCTGGTGATGCTCTGTGTGTTGCCACTGGTCTGGCGACCGATGACGGCAGCTGATCTGGCGCTGGTCGGGGCCTATG CGGTCCTGCTGTTTGGGGCGCGTTGGCTGTTGGTATTAGCGCTGCGGCAGCTGCCGGCCTATACGGTGACACCGCTTCTC AATCTGCAATTTGTCTGGATGGCGCTGATCGGATTGATGTTCTTTGGTGAAGTGCCATTTGTATCAACCTATTTGGGCAT GGCGGTTGTTGCGGCATCGGGTCTCTTTTTGGTCTGGGATCAGGCTCAAACTCAAACACCCGTCCGCACTGAGGCGCCTA TGGCGACGATTGCCTCGGACAAATATCGTCGTGGGAACAGGGCGCCTGCACGCGGCGTTCGGCGCAATGACCGGCGCAGT GGCGCTTGGCGCACGCGGCGCCGGGTGCAGTCCGGCCGCTAA
Upstream 100 bases:
>100_bases GTTCCGAAGAGGGGGAGGTTCTGCGCCGCGCTGAGGAAAGCACGCCCTTGTTCGAGCCCTTTTTCGAGACATTTTCGCGC TTTGGCCAGGTGAGTAGCGC
Downstream 100 bases:
>100_bases GTGCGTCGCGCGCGCGAGTGATGTGCGAGATTGTGTGCGCTGGCCGGGGGGGGCAGCGCGTAACTTCAATTCTTCGTAGG TCCGATGCCCAAGAGGGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 333; Mature: 332
Protein sequence:
>333_residues MSPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPDGLRTNCKRAMLLRSGATVLS CTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIRPVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGT LSIIMARYISRYESNVLAQVFYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLL NLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASDKYRRGNRAPARGVRRNDRRS GAWRTRRRVQSGR
Sequences:
>Translated_333_residues MSPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPDGLRTNCKRAMLLRSGATVLS CTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIRPVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGT LSIIMARYISRYESNVLAQVFYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLL NLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASDKYRRGNRAPARGVRRNDRRS GAWRTRRRVQSGR >Mature_332_residues SPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPDGLRTNCKRAMLLRSGATVLSC TSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIRPVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGTL SIIMARYISRYESNVLAQVFYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLLN LQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASDKYRRGNRAPARGVRRNDRRSG AWRTRRRVQSGR
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35934; Mature: 35802
Theoretical pI: Translated: 11.58; Mature: 11.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC GLRTNCKRAMLLRSGATVLSCTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGTLSIIMARYISRYESNVLAQV HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH FYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLL HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH NLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHH KYRRGNRAPARGVRRNDRRSGAWRTRRRVQSGR HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC >Mature Secondary Structure SPVATGVLAVLLYTGLIAAADGIVKLMAGGFAPAQLFALSGLLVAGFCVIAGRLQGHPD CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC GLRTNCKRAMLLRSGATVLSCTSFFFAFRYLALAEVFVFIALMPLMAAMMSGLILKERIR HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVVWLALSLGVIGILVMRPTVQVGGALGSALALSGVGFGTLSIIMARYISRYESNVLAQV HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH FYPNLTLGLVMLCVLPLVWRPMTAADLALVGAYAVLLFGARWLLVLALRQLPAYTVTPLL HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH NLQFVWMALIGLMFFGEVPFVSTYLGMAVVAASGLFLVWDQAQTQTPVRTEAPMATIASD HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHH KYRRGNRAPARGVRRNDRRSGAWRTRRRVQSGR HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA