| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080729
Identifier: 99080729
GI number: 99080729
Start: 949266
End: 949805
Strand: Direct
Name: 99080729
Synonym: TM1040_0888
Alternate gene names: NA
Gene position: 949266-949805 (Clockwise)
Preceding gene: 99080728
Following gene: 99080736
Centisome position: 29.66
GC content: 65.74
Gene sequence:
>540_bases GTGAAGCTGCTGCTTGATACCTGCGTGCTCTACCCGACCGTGATGCGCGAGATGCTGCTGGGCGCGGCGCGCGCGGGGCA TTTTGTGCCGCTCTGGTCGGCGCGGATTTTGGGCGAGTGGGAGCGCGCGGCAGTGAAGCTCGGCCCCGCCGGCGCGGCGC AGGCCACAGCTGAAATTGCGCTCCTGAAGGCGGCGTGGCCCAAGGCGGAGGTCGCGCCAGCCCCCGGTCTCGAGGCCCGA TTGTGGTTGCCGGATCAGCATGACATTCATGTGCTTGCTGCAGCGATTGCAGGCCATGCGGATGGGATCGTCACCGTCAA CGCAAAGGATTTCCCCCGCCAGACGCTGGCGGAGGAAGGGCTGACGCGCAGCGCGCCCGATGAGCTCTTGTATGACTTCT GGCTCAAACATCCCGAGGGGATCGAGGCCGTTGGGCAGGCTGTACTTGCGGAGGCCAGAAGGCTCTCGGGTGAGGACTGG CAGATGCGGGCGCTGTTGAAAAAGGCGCGTCTGCCACGGCTTGCCAAGGCTTTGGCCTGA
Upstream 100 bases:
>100_bases ACACCGGCTATGCGGGGGCGGACCATCCGCAGATGCCGCAGCTGGCCGAGAGCGGCTATCTCAAGGCCGTGTTCTTCCGG CTCGACTGAGGTCTCTGACC
Downstream 100 bases:
>100_bases CTTGAAAAAAACTGAGGGCAGAGTTCGACCGCGGGCGGAAGCAAAGCGCCCGCCCATGGGGGCGGTCGGGCGCTGCCCGG CCTGTCGTCCGGGCAAAACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MKLLLDTCVLYPTVMREMLLGAARAGHFVPLWSARILGEWERAAVKLGPAGAAQATAEIALLKAAWPKAEVAPAPGLEAR LWLPDQHDIHVLAAAIAGHADGIVTVNAKDFPRQTLAEEGLTRSAPDELLYDFWLKHPEGIEAVGQAVLAEARRLSGEDW QMRALLKKARLPRLAKALA
Sequences:
>Translated_179_residues MKLLLDTCVLYPTVMREMLLGAARAGHFVPLWSARILGEWERAAVKLGPAGAAQATAEIALLKAAWPKAEVAPAPGLEAR LWLPDQHDIHVLAAAIAGHADGIVTVNAKDFPRQTLAEEGLTRSAPDELLYDFWLKHPEGIEAVGQAVLAEARRLSGEDW QMRALLKKARLPRLAKALA >Mature_179_residues MKLLLDTCVLYPTVMREMLLGAARAGHFVPLWSARILGEWERAAVKLGPAGAAQATAEIALLKAAWPKAEVAPAPGLEAR LWLPDQHDIHVLAAAIAGHADGIVTVNAKDFPRQTLAEEGLTRSAPDELLYDFWLKHPEGIEAVGQAVLAEARRLSGEDW QMRALLKKARLPRLAKALA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19433; Mature: 19433
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLLDTCVLYPTVMREMLLGAARAGHFVPLWSARILGEWERAAVKLGPAGAAQATAEIA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH LLKAAWPKAEVAPAPGLEARLWLPDQHDIHVLAAAIAGHADGIVTVNAKDFPRQTLAEEG HHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCC LTRSAPDELLYDFWLKHPEGIEAVGQAVLAEARRLSGEDWQMRALLKKARLPRLAKALA CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCC >Mature Secondary Structure MKLLLDTCVLYPTVMREMLLGAARAGHFVPLWSARILGEWERAAVKLGPAGAAQATAEIA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH LLKAAWPKAEVAPAPGLEARLWLPDQHDIHVLAAAIAGHADGIVTVNAKDFPRQTLAEEG HHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCC LTRSAPDELLYDFWLKHPEGIEAVGQAVLAEARRLSGEDWQMRALLKKARLPRLAKALA CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA