| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is 94985905
Identifier: 94985905
GI number: 94985905
Start: 1921902
End: 1922774
Strand: Reverse
Name: 94985905
Synonym: Dgeo_1805
Alternate gene names: NA
Gene position: 1922774-1921902 (Counterclockwise)
Preceding gene: 94985906
Following gene: 94985904
Centisome position: 77.93
GC content: 65.18
Gene sequence:
>873_bases GTGACGACCCCCCCCACCCCCGCGCCTGACCCGGCGCGCACCACGCCCGGCACCCTCGCGCACCAGATTCGCGCGGCCTG GGCCTTTGTGTTCCGCGACTACCACCTCACCCGGCGCTACTGGTCCTGGGTGCTGGTCTTTACCTTCTACGACATGGTGT CGGCGGCCAGCATCATGCTGATCGGCGTGGCGGCGCACAATCCTCGCCTGACCCTCACCCTGCTGCTGGGCGCCGTGATG TGGTCCTTCCTGGGCCGCCTCTTCGGGGAGATCGCCAACAGCATCAGCTACGAACGCTGGGAAGGCACCATCGAGTACAC CTTTATGGCCCCGGTCAGCCGCTTGACGCATCTGGTCGGTGTGAGCCTCTTTGCGGGGGCCTACGCGCTGCTGCGCGGGG TGCTGGTGTTCCTGTTTATGAGCCTTTTCGTGGACATTGGGGCCAGCTTTACCCAGGTGCTGGAGTGCCTGGTGGTGTTT ATGGTGGCCAGCCTGGGCTTTATGGGAATCGGCCTGATGGCGGCGGTGCTGCCGGTCATGAGCACCGAGAACGGCGCGCA GGCCACCAACATCATTCAGGCCGTGTTCCTGCTGATCTCCGGTGTGTACTACCCGGTCAGCGTCCTGCCCGCCTGGCTCC AGCCGATCAGCGCCCTCTCTCCGGCCACCTATGCCCTGAACGCCTGCCGCAAGATTCTGGGCGTCAACGGCACGGGGACC GCCATCCAGCCCGGCGTGTCCCTGGCGGGTGTGTTGCCGGAACTGGGCATCCTGCTGCTGTTCGGCCTGATCACCATCCC GCTGGGTCTATTCGTATTTGGGCGGGCCGAAAGCTGGGCCAAACGCACTGGAAAGCTGAAGCGGGTGGGATGA
Upstream 100 bases:
>100_bases CGGACGAGCTGCGCGCCCTCGCTGGGCCAGGCAAGAGCCTGGAGGACGCCTTTATCGAACTGACCGGTGAGGATCTGGCC AAGCAAGGCGAGGAGGAACT
Downstream 100 bases:
>100_bases GCCTCTGGGAGAGTGCCGGGTGCGAGTTAAGCTTTTGCACTCTGCCCGCTTCCCCCAGCGCTCTGCCAGAATTCCCCCAT GTTGACCCGCGCCGACCTGG
Product: ABC-2 type transporter
Products: NA
Alternate protein names: ABC-Type Multidrug Transport System Permease Component; ABC Transporter Permease Protein
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MTTPPTPAPDPARTTPGTLAHQIRAAWAFVFRDYHLTRRYWSWVLVFTFYDMVSAASIMLIGVAAHNPRLTLTLLLGAVM WSFLGRLFGEIANSISYERWEGTIEYTFMAPVSRLTHLVGVSLFAGAYALLRGVLVFLFMSLFVDIGASFTQVLECLVVF MVASLGFMGIGLMAAVLPVMSTENGAQATNIIQAVFLLISGVYYPVSVLPAWLQPISALSPATYALNACRKILGVNGTGT AIQPGVSLAGVLPELGILLLFGLITIPLGLFVFGRAESWAKRTGKLKRVG
Sequences:
>Translated_290_residues MTTPPTPAPDPARTTPGTLAHQIRAAWAFVFRDYHLTRRYWSWVLVFTFYDMVSAASIMLIGVAAHNPRLTLTLLLGAVM WSFLGRLFGEIANSISYERWEGTIEYTFMAPVSRLTHLVGVSLFAGAYALLRGVLVFLFMSLFVDIGASFTQVLECLVVF MVASLGFMGIGLMAAVLPVMSTENGAQATNIIQAVFLLISGVYYPVSVLPAWLQPISALSPATYALNACRKILGVNGTGT AIQPGVSLAGVLPELGILLLFGLITIPLGLFVFGRAESWAKRTGKLKRVG >Mature_289_residues TTPPTPAPDPARTTPGTLAHQIRAAWAFVFRDYHLTRRYWSWVLVFTFYDMVSAASIMLIGVAAHNPRLTLTLLLGAVMW SFLGRLFGEIANSISYERWEGTIEYTFMAPVSRLTHLVGVSLFAGAYALLRGVLVFLFMSLFVDIGASFTQVLECLVVFM VASLGFMGIGLMAAVLPVMSTENGAQATNIIQAVFLLISGVYYPVSVLPAWLQPISALSPATYALNACRKILGVNGTGTA IQPGVSLAGVLPELGILLLFGLITIPLGLFVFGRAESWAKRTGKLKRVG
Specific function: Unknown
COG id: COG0842
COG function: function code V; ABC-type multidrug transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31395; Mature: 31263
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: PS51012 ABC_TM2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPPTPAPDPARTTPGTLAHQIRAAWAFVFRDYHLTRRYWSWVLVFTFYDMVSAASIML CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGVAAHNPRLTLTLLLGAVMWSFLGRLFGEIANSISYERWEGTIEYTFMAPVSRLTHLVG HEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEHHHHHHHHHHHH VSLFAGAYALLRGVLVFLFMSLFVDIGASFTQVLECLVVFMVASLGFMGIGLMAAVLPVM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STENGAQATNIIQAVFLLISGVYYPVSVLPAWLQPISALSPATYALNACRKILGVNGTGT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC AIQPGVSLAGVLPELGILLLFGLITIPLGLFVFGRAESWAKRTGKLKRVG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC >Mature Secondary Structure TTPPTPAPDPARTTPGTLAHQIRAAWAFVFRDYHLTRRYWSWVLVFTFYDMVSAASIML CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGVAAHNPRLTLTLLLGAVMWSFLGRLFGEIANSISYERWEGTIEYTFMAPVSRLTHLVG HEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEHHHHHHHHHHHH VSLFAGAYALLRGVLVFLFMSLFVDIGASFTQVLECLVVFMVASLGFMGIGLMAAVLPVM HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH STENGAQATNIIQAVFLLISGVYYPVSVLPAWLQPISALSPATYALNACRKILGVNGTGT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC AIQPGVSLAGVLPELGILLLFGLITIPLGLFVFGRAESWAKRTGKLKRVG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA