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The map label for this gene is xerD [C]

Identifier: 94985803

GI number: 94985803

Start: 1808857

End: 1809714

Strand: Reverse

Name: xerD [C]

Synonym: Dgeo_1703

Alternate gene names: 94985803

Gene position: 1809714-1808857 (Counterclockwise)

Preceding gene: 94985805

Following gene: 94985801

Centisome position: 73.35

GC content: 64.22

Gene sequence:

>858_bases
ATGGACGTGACCACCCTCCAGACGCAAGCCGAACGCTTTCTGACCGAGTTGAAGCGCAGCCCGCAGACGGTCCGCGCCTA
CCGCGCGGACCTCCGGCACCTGACGACCTGGCTGGAAGAAACCGGGCAGGTTCTGAATGGAGAAGGTCTGGATGCCTATT
TCGCTGCCCATCTGCACTGGGCACCGGCCACCCGGAACCGCAAGCAGACGGCACTGGAACGGTTCTGTCACTGGGCACTG
CAACGCGAGTTGCTGGACCGTGATCCCACCCTGCATCTGGAGCGCCCCAGCCTGCCGCCCCCACATCCACGCGGACTACG
CCGGGAGGAGATCGAGCGCATCTTCGCGGTGATTCCGGCAGAACAGGTACGGGATGCCCTGCTGTTCCGCCTCGTCTTCG
AGACGGGGTTGCGAATCGGTGAAGCCCTGGGAGTGCACGTGGAAGACCTCGACCTGACGCGGGGCGACGAACATCTGACG
GTGCTGGGGAAGGGCAGCCGGAGACGGACCGTGCTGCTGGACGACCCCAAGTTGGTGAACATGCTGCGGCGCTACCTGCG
AACCCTGGGCTACACGCATGGGCCGTTGTTCCAGGCGACGAAGAACGGACGAGGGGGACCACTGCGCTATCAGAGCGTGC
AGGAACGCTGGCAGGGGTACGCCGAGCGTGCAGGTGTCACCTGCACGCTTCACCAATTACGACATAGCCACGCGACGGAA
CTGGTGAACGGCGGCGTGAGCCTGGCGACCATCCGCAAACGGCTGGGGCATCAGCATATCCAGACGACTCTGCGGTACGC
CGAGGTCAGTGATCAAACGGCGGATGCGGAAGTGCGTCAGTGGCGTCGCCGTCAATAG

Upstream 100 bases:

>100_bases
TATCTCTGGATTCTCCCTCAGCGTCCCCGATGAACGGCTATCCCAACCCGCCTGTCTCATGCCCCCTGTTTTACAGTTAT
CGCAGGAAGAAAGGGAAAGC

Downstream 100 bases:

>100_bases
GTAGAGCTCAGGAGTTGCACCTTGCAATTTTGAGTGAATAGCCGTGCTGGCGCAGAAATTCCTCGTCTGTGGCGAGGCGG
GCGAAGATGACGTTCAAGCG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MDVTTLQTQAERFLTELKRSPQTVRAYRADLRHLTTWLEETGQVLNGEGLDAYFAAHLHWAPATRNRKQTALERFCHWAL
QRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPAEQVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLT
VLGKGSRRRTVLLDDPKLVNMLRRYLRTLGYTHGPLFQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATE
LVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTADAEVRQWRRRQ

Sequences:

>Translated_285_residues
MDVTTLQTQAERFLTELKRSPQTVRAYRADLRHLTTWLEETGQVLNGEGLDAYFAAHLHWAPATRNRKQTALERFCHWAL
QRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPAEQVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLT
VLGKGSRRRTVLLDDPKLVNMLRRYLRTLGYTHGPLFQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATE
LVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTADAEVRQWRRRQ
>Mature_285_residues
MDVTTLQTQAERFLTELKRSPQTVRAYRADLRHLTTWLEETGQVLNGEGLDAYFAAHLHWAPATRNRKQTALERFCHWAL
QRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPAEQVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLT
VLGKGSRRRTVLLDDPKLVNMLRRYLRTLGYTHGPLFQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATE
LVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTADAEVRQWRRRQ

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=283, Percent_Identity=28.9752650176678, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=24.3150684931507, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32913; Mature: 32913

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVTTLQTQAERFLTELKRSPQTVRAYRADLRHLTTWLEETGQVLNGEGLDAYFAAHLHW
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEE
APATRNRKQTALERFCHWALQRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCH
EQVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKLVN
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCCCEEEECCHHHHH
MLRRYLRTLGYTHGPLFQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATE
HHHHHHHHCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTADAEVRQWRRRQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MDVTTLQTQAERFLTELKRSPQTVRAYRADLRHLTTWLEETGQVLNGEGLDAYFAAHLHW
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEE
APATRNRKQTALERFCHWALQRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCH
EQVRDALLFRLVFETGLRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKLVN
HHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCCCEEEECCHHHHH
MLRRYLRTLGYTHGPLFQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATE
HHHHHHHHCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LVNGGVSLATIRKRLGHQHIQTTLRYAEVSDQTADAEVRQWRRRQ
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA