Click here to switch to the map view.

The map label for this gene is ydbC [H]

Identifier: 94985785

GI number: 94985785

Start: 1792737

End: 1793639

Strand: Reverse

Name: ydbC [H]

Synonym: Dgeo_1685

Alternate gene names: 94985785

Gene position: 1793639-1792737 (Counterclockwise)

Preceding gene: 94985786

Following gene: 94985784

Centisome position: 72.7

GC content: 67.33

Gene sequence:

>903_bases
ATGACTGACACCATCACCCCGAACGCCGCCCAGAGCGGAATCTTCCGGATTGGCGGCGAGTTGCCCGTTCACCGTCTGGG
CTTCGGCGCGATGCGCATCACCGGCGAGGGCGTCTGGGGCGATCCCCAGGACCGCGAGGAGGCGCTCGCGACCCTGCGCC
GTGTGCCCGAACTCGGCGTGAACTTGATCGACACCGCCGACTCCTACGGCCCCGCCGTCAGTGAGGAACTCATTCACGAA
GCCCTCTTCCCCTATGACGCCGTGGTGATCGCCACCAAGGGGGGCCTCACCCGCACCGGGCCCAACGTCTGGCCCCCTTG
CGGCCGCCCAGAATACCTGATTCAGCAGGCGTACCTGTCGTGCCGCCGCCTGGGCGTGGAGCGCATCGACCTGTGGCAAC
TGCACCGCATCGATCCCAAGGTGCCCCGCGACGAGCAGTTTGGCGCTGTCCGCGAGCTGCTGGACCGCGGCGTGATCCGC
TTTGCAGGTCTCAGCGAGGTGAACGTTGAGGAGATCGAAGCGGCCCGCCAAGTCTTCCCGGTCGCGACCGTTCAGAACCT
CTACAACCTGGTCAACCGCAAGTCCGAGGAGGTGTTGGACTACTGCGAACGCGAGGGGATCGGCTTTCTGCCCTGGTACC
CGCTTGCAGCGGGCGGCTTGGCGCGGGAAGGCAGCGTGCTTTCGGACATCGCGACTCGCCTGGGAGCTACGCCCTCGCAG
GTGGCGCTCGCCTGGGTGCTGAGGCGCAGCCCGGTGATGCTGCCGATTCCCGGCACCGGCAAGGTCAAGCACCTGGAGGA
AAATGTGGCCGCCGCCGGCCTAAGCCTCAGCGACGAGGACTTCCGGGCGCTGGACGAGGTGGGCCGCGCGGAATGGAACC
GCAAACAGGTGCCGCAGGGCTGA

Upstream 100 bases:

>100_bases
CCGAGCAGGAGGAACATGAAGGGAGCCTGTAGTTTCCTCCCGGCGACGTGCCATCTTCCCTCACCGCCTAGCGGTCAGAA
TACCCGGTGGAGGAGAGGCC

Downstream 100 bases:

>100_bases
AGTAACGTCTAGAACTGCGCGTGGGGGATGGTTGCGGGGCCGAACCCTGACTTGATGCGGCTTGATGCGCACAGCGGTCA
CCGTGCCTTCCCGCACGGTA

Product: aldo/keto reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MTDTITPNAAQSGIFRIGGELPVHRLGFGAMRITGEGVWGDPQDREEALATLRRVPELGVNLIDTADSYGPAVSEELIHE
ALFPYDAVVIATKGGLTRTGPNVWPPCGRPEYLIQQAYLSCRRLGVERIDLWQLHRIDPKVPRDEQFGAVRELLDRGVIR
FAGLSEVNVEEIEAARQVFPVATVQNLYNLVNRKSEEVLDYCEREGIGFLPWYPLAAGGLAREGSVLSDIATRLGATPSQ
VALAWVLRRSPVMLPIPGTGKVKHLEENVAAAGLSLSDEDFRALDEVGRAEWNRKQVPQG

Sequences:

>Translated_300_residues
MTDTITPNAAQSGIFRIGGELPVHRLGFGAMRITGEGVWGDPQDREEALATLRRVPELGVNLIDTADSYGPAVSEELIHE
ALFPYDAVVIATKGGLTRTGPNVWPPCGRPEYLIQQAYLSCRRLGVERIDLWQLHRIDPKVPRDEQFGAVRELLDRGVIR
FAGLSEVNVEEIEAARQVFPVATVQNLYNLVNRKSEEVLDYCEREGIGFLPWYPLAAGGLAREGSVLSDIATRLGATPSQ
VALAWVLRRSPVMLPIPGTGKVKHLEENVAAAGLSLSDEDFRALDEVGRAEWNRKQVPQG
>Mature_299_residues
TDTITPNAAQSGIFRIGGELPVHRLGFGAMRITGEGVWGDPQDREEALATLRRVPELGVNLIDTADSYGPAVSEELIHEA
LFPYDAVVIATKGGLTRTGPNVWPPCGRPEYLIQQAYLSCRRLGVERIDLWQLHRIDPKVPRDEQFGAVRELLDRGVIRF
AGLSEVNVEEIEAARQVFPVATVQNLYNLVNRKSEEVLDYCEREGIGFLPWYPLAAGGLAREGSVLSDIATRLGATPSQV
ALAWVLRRSPVMLPIPGTGKVKHLEENVAAAGLSLSDEDFRALDEVGRAEWNRKQVPQG

Specific function: Unknown

COG id: COG0667

COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldo/keto reductase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787674, Length=286, Percent_Identity=40.5594405594406, Blast_Score=204, Evalue=6e-54,
Organism=Escherichia coli, GI87081735, Length=308, Percent_Identity=29.8701298701299, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788081, Length=265, Percent_Identity=29.811320754717, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788070, Length=316, Percent_Identity=26.5822784810127, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789375, Length=325, Percent_Identity=26.1538461538462, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786400, Length=267, Percent_Identity=28.8389513108614, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994888, Length=239, Percent_Identity=28.0334728033473, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71998625, Length=262, Percent_Identity=24.4274809160305, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6325169, Length=338, Percent_Identity=23.6686390532544, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6322556, Length=168, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001395
- InterPro:   IPR023210 [H]

Pfam domain/function: PF00248 Aldo_ket_red [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 32998; Mature: 32867

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTITPNAAQSGIFRIGGELPVHRLGFGAMRITGEGVWGDPQDREEALATLRRVPELGV
CCCCCCCCHHHCCCEEECCCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
NLIDTADSYGPAVSEELIHEALFPYDAVVIATKGGLTRTGPNVWPPCGRPEYLIQQAYLS
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
CRRLGVERIDLWQLHRIDPKVPRDEQFGAVRELLDRGVIRFAGLSEVNVEEIEAARQVFP
HHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHH
VATVQNLYNLVNRKSEEVLDYCEREGIGFLPWYPLAAGGLAREGSVLSDIATRLGATPSQ
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHH
VALAWVLRRSPVMLPIPGTGKVKHLEENVAAAGLSLSDEDFRALDEVGRAEWNRKQVPQG
HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDTITPNAAQSGIFRIGGELPVHRLGFGAMRITGEGVWGDPQDREEALATLRRVPELGV
CCCCCCCHHHCCCEEECCCCCHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
NLIDTADSYGPAVSEELIHEALFPYDAVVIATKGGLTRTGPNVWPPCGRPEYLIQQAYLS
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
CRRLGVERIDLWQLHRIDPKVPRDEQFGAVRELLDRGVIRFAGLSEVNVEEIEAARQVFP
HHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEECCCCCCCHHHHHHHHHHHH
VATVQNLYNLVNRKSEEVLDYCEREGIGFLPWYPLAAGGLAREGSVLSDIATRLGATPSQ
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCHHH
VALAWVLRRSPVMLPIPGTGKVKHLEENVAAAGLSLSDEDFRALDEVGRAEWNRKQVPQG
HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1665988; 9097039; 9278503; 9748275 [H]