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The map label for this gene is infC

Identifier: 94985609

GI number: 94985609

Start: 1603384

End: 1603998

Strand: Reverse

Name: infC

Synonym: Dgeo_1509

Alternate gene names: 94985609

Gene position: 1603998-1603384 (Counterclockwise)

Preceding gene: 94985616

Following gene: 94985608

Centisome position: 65.01

GC content: 61.79

Gene sequence:

>615_bases
GTGATAGACATAGCGAAAGAACATAAGGTCAACGAGCAGATTCGCGTTCGTCAGATTCGCCTGATCGGCGCTGAAGGCGA
GCAGATCGGGATCATCGACACGCGCGACGCGCTGGCGATGGCGCGTGAAAAGGGTCTGGACCTCGTGATGGTGAGTCCGC
AGGCCGTCCCGCCCGTCTGCCGCCTGCTCGACTATGGCCGGTTCCGCTACGAGCAGCAGCAGAACGAGAAGGAAAACCGC
AAGCGTGCCCGCGCTCAGGAAGTCAAGGCGATCAAGTTCCGGGTCAAGATCGATGACCACGACTTCAACACCAAGACCGG
GCACGTCCGGCGCTTCCTCGAAGAAGGCCACAAAGTGAAGGTCACCATCATGTTCCGTGGCCGTGAGCGCACCCACCCCG
AACTTGGGGAGCGAATTCTGCACCGTGTGGCCGAAACCCTGGCCGATATCGGCGCGCCCGAAGGAATGCCCAGCATGATG
GGCATGGACATGAACATGATCATGGTGCCCAAAGCGGCCCCCAAACGGGACAGCGGCCGCAGCGAGAGTGCTCAGGAAGC
CCCGACCGCTCGGTCTGCCGAAGCTTCCCGTCCCGAAGCTCCCGCAAACGCCTGA

Upstream 100 bases:

>100_bases
GGCACATTCCGGCGCTGGCTGTCTCCGTGTTAAAATAACTTGACAGGCCCACTGAGGCTTGCGAGCCGCCTGACCGCCAG
CGTGTGGGAGGCGTGCGGAG

Downstream 100 bases:

>100_bases
TTACTGCGCTGCCGCGGCGGCCCGCCTCCCCGGTGGGCCGCCTTTGCTGTGACAGTGGTGTGGCGGTGGTTGGCGTCCTA
CCGCCGCTGACGCTTTGTTT

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MIDIAKEHKVNEQIRVRQIRLIGAEGEQIGIIDTRDALAMAREKGLDLVMVSPQAVPPVCRLLDYGRFRYEQQQNEKENR
KRARAQEVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVKVTIMFRGRERTHPELGERILHRVAETLADIGAPEGMPSMM
GMDMNMIMVPKAAPKRDSGRSESAQEAPTARSAEASRPEAPANA

Sequences:

>Translated_204_residues
MIDIAKEHKVNEQIRVRQIRLIGAEGEQIGIIDTRDALAMAREKGLDLVMVSPQAVPPVCRLLDYGRFRYEQQQNEKENR
KRARAQEVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVKVTIMFRGRERTHPELGERILHRVAETLADIGAPEGMPSMM
GMDMNMIMVPKAAPKRDSGRSESAQEAPTARSAEASRPEAPANA
>Mature_204_residues
MIDIAKEHKVNEQIRVRQIRLIGAEGEQIGIIDTRDALAMAREKGLDLVMVSPQAVPPVCRLLDYGRFRYEQQQNEKENR
KRARAQEVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVKVTIMFRGRERTHPELGERILHRVAETLADIGAPEGMPSMM
GMDMNMIMVPKAAPKRDSGRSESAQEAPTARSAEASRPEAPANA

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family

Homologues:

Organism=Escherichia coli, GI1788012, Length=171, Percent_Identity=43.859649122807, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF3_DEIGD (Q1IY80)

Other databases:

- EMBL:   CP000359
- RefSeq:   YP_604973.1
- ProteinModelPortal:   Q1IY80
- STRING:   Q1IY80
- GeneID:   4057395
- GenomeReviews:   CP000359_GR
- KEGG:   dge:Dgeo_1509
- NMPDR:   fig|68909.1.peg.1706
- eggNOG:   COG0290
- HOGENOM:   HBG744268
- OMA:   FDRRAPV
- ProtClustDB:   PRK00028
- BioCyc:   DGEO319795:DGEO_1509-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00080
- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814
- Gene3D:   G3DSA:3.10.20.80
- Gene3D:   G3DSA:3.30.110.10
- PANTHER:   PTHR10938
- TIGRFAMs:   TIGR00168

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N; SSF54364 IF3; SSF55200 IF3

EC number: NA

Molecular weight: Translated: 23090; Mature: 23090

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIAKEHKVNEQIRVRQIRLIGAEGEQIGIIDTRDALAMAREKGLDLVMVSPQAVPPVC
CCCCCCHHCCCHHHEEEEEEEECCCCCEEEEEECHHHHHHHHHCCCEEEEECCCCCCHHH
RLLDYGRFRYEQQQNEKENRKRARAQEVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHHHCCCEEE
VTIMFRGRERTHPELGERILHRVAETLADIGAPEGMPSMMGMDMNMIMVPKAAPKRDSGR
EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEECCCCCCCCCCC
SESAQEAPTARSAEASRPEAPANA
CCCHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIDIAKEHKVNEQIRVRQIRLIGAEGEQIGIIDTRDALAMAREKGLDLVMVSPQAVPPVC
CCCCCCHHCCCHHHEEEEEEEECCCCCEEEEEECHHHHHHHHHCCCEEEEECCCCCCHHH
RLLDYGRFRYEQQQNEKENRKRARAQEVKAIKFRVKIDDHDFNTKTGHVRRFLEEGHKVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHHHHCCCEEE
VTIMFRGRERTHPELGERILHRVAETLADIGAPEGMPSMMGMDMNMIMVPKAAPKRDSGR
EEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEECCCCCCCCCCC
SESAQEAPTARSAEASRPEAPANA
CCCHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA