Click here to switch to the map view.

The map label for this gene is panD

Identifier: 94985522

GI number: 94985522

Start: 1509303

End: 1509653

Strand: Reverse

Name: panD

Synonym: Dgeo_1422

Alternate gene names: 94985522

Gene position: 1509653-1509303 (Counterclockwise)

Preceding gene: 94985523

Following gene: 94985520

Centisome position: 61.19

GC content: 62.96

Gene sequence:

>351_bases
ATGTTCAGGGCCAAAATTCACCGCGCCACCGTCACGCAAGCGGACCTCGACTACGTGGGGAGCGTGACCATCGACCAGGA
CCTGCTGGATGCGGCAGACATCCTGGTCAACGAGCGTGTGGATATCTACAACATCACCAACGGCAATCGCCTGAGCACCT
ATGCCCTCAGCGGTCCGCGTGGCAGCGGCGTGATCGGCATCAACGGCGCTGCCGCACACCTGGTGCAGCCCGGCGACCTG
GTGATCATCGCGGCCTACGGCAACTTCAGCGAGGAAGAAGCCCGGACCCTTGAACCGCGTGTGGTGCTGGTAGACGCGCA
GAACCGGATCCTGGACCTTCAGCCAGCCTGA

Upstream 100 bases:

>100_bases
GAGTAGCCCTGCACCCAGTGGGTGAGGGGTGACCAATCAGGCTCCCCATCACGTCTTCTCGTCTGCCCAGGGCGTACAAT
TCGGCGTTGTGGAACGCATC

Downstream 100 bases:

>100_bases
GTCGGGCAGAGAGAGGCTAGCCGGGCAGGGCGTCCAAGTCCGCGCGGGTGGGGGCGTATGCGCCGGGCCGAGCACACGCG
GCGGCGGCGGCCCGCAGCCC

Product: aspartate alpha-decarboxylase

Products: NA

Alternate protein names: Aspartate alpha-decarboxylase

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MFRAKIHRATVTQADLDYVGSVTIDQDLLDAADILVNERVDIYNITNGNRLSTYALSGPRGSGVIGINGAAAHLVQPGDL
VIIAAYGNFSEEEARTLEPRVVLVDAQNRILDLQPA

Sequences:

>Translated_116_residues
MFRAKIHRATVTQADLDYVGSVTIDQDLLDAADILVNERVDIYNITNGNRLSTYALSGPRGSGVIGINGAAAHLVQPGDL
VIIAAYGNFSEEEARTLEPRVVLVDAQNRILDLQPA
>Mature_116_residues
MFRAKIHRATVTQADLDYVGSVTIDQDLLDAADILVNERVDIYNITNGNRLSTYALSGPRGSGVIGINGAAAHLVQPGDL
VIIAAYGNFSEEEARTLEPRVVLVDAQNRILDLQPA

Specific function: Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine

COG id: COG0853

COG function: function code H; Aspartate 1-decarboxylase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the panD family

Homologues:

Organism=Escherichia coli, GI1786323, Length=110, Percent_Identity=53.6363636363636, Blast_Score=127, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PAND_DEIGD (Q1IYG7)

Other databases:

- EMBL:   CP000359
- RefSeq:   YP_604886.1
- ProteinModelPortal:   Q1IYG7
- SMR:   Q1IYG7
- STRING:   Q1IYG7
- GeneID:   4059055
- GenomeReviews:   CP000359_GR
- KEGG:   dge:Dgeo_1422
- NMPDR:   fig|68909.1.peg.1791
- eggNOG:   COG0853
- HOGENOM:   HBG302821
- ProtClustDB:   PRK05449
- BioCyc:   DGEO319795:DGEO_1422-MONOMER
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00446
- InterPro:   IPR009010
- InterPro:   IPR003190
- Gene3D:   G3DSA:2.40.40.20
- PANTHER:   PTHR21012
- PIRSF:   PIRSF006246
- ProDom:   PD009294
- TIGRFAMs:   TIGR00223

Pfam domain/function: PF02261 Asp_decarbox; SSF50692 Asp_decarb_fold

EC number: =4.1.1.11

Molecular weight: Translated: 12503; Mature: 12503

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: ACT_SITE 25-25 ACT_SITE 58-58 BINDING 57-57

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRAKIHRATVTQADLDYVGSVTIDQDLLDAADILVNERVDIYNITNGNRLSTYALSGPR
CCCCCEEEEEECCCCCCEECEEEECHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCC
GSGVIGINGAAAHLVQPGDLVIIAAYGNFSEEEARTLEPRVVLVDAQNRILDLQPA
CCCEEEECCCEEEEECCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCEEEECCC
>Mature Secondary Structure
MFRAKIHRATVTQADLDYVGSVTIDQDLLDAADILVNERVDIYNITNGNRLSTYALSGPR
CCCCCEEEEEECCCCCCEECEEEECHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCC
GSGVIGINGAAAHLVQPGDLVIIAAYGNFSEEEARTLEPRVVLVDAQNRILDLQPA
CCCEEEECCCEEEEECCCCEEEEEECCCCCCCHHHCCCCEEEEEECCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA